Biological dark matter

Source: Wikipedia, the free encyclopedia.

Biological dark matter is an informal term for unclassified or poorly understood

Eukaryota; thus, it has been suggested that a possible fourth domain of life may yet be discovered,[1][2] although other explanations are also probable. Alternatively, the genetic material may refer to non-coding DNA (so-called "junk DNA")[3][4][5] and non-coding RNA produced by known organisms.[6][7][8]

Genomic dark matter

Much of the genomic dark matter is thought to originate from ancient

humans and many other species.[1][11] Their phylogenetic novelty could indicate the cellular organisms or viruses from which they evolved.[12]

Unclassified microorganisms

Up to 99% of all living microorganisms cannot be cultured,[13][14][15][16][17] so few functional insights exist about the metabolic potential of these organisms.

Sequences that are believed to be derived from unknown microbes are referred to as the microbial dark matter,[18] the dark virome,[19] or dark matter fungi.[20] Such sequences are not rare. It has been estimated that in material from humans, between 40 and 90% of viral sequences are from dark matter.[21][22][23] Human blood contains over three thousand different DNA sequences which cannot yet be identified.[24] A mycological study from 2023 found that dark matter fungi seem to dominate the fungal kingdom. [25]

Algorithms have been developed that examine sequences for similarities to bacterial

type-1 diabetes that have characteristics of viruses.[34]
Although they might exist, no organisms that clearly cause human disease have been discovered in the dark matter.

In February 2023, scientists reported the findings of unusual DNA strands from the microorganisms in "dark microbiome" in the driest non-polar desert on the Earth.[35][36]

See also

References

  1. ^
    PMID 21437252
    .
  2. PMID 26502935
    .
  3. .
  4. ^ Kolata G (5 September 2012). "Bits of Mystery DNA, Far From 'Junk', Play Crucial Role". The New York Times. Retrieved 2015-09-09.
  5. ^ Boyle R (6 September 2012). "Inside the Mysterious Dark Matter of the Human Genome". Popular Science. Retrieved 2015-09-09.
  6. ^ Pugh BF, Voss K (13 September 2013). "Scientists Discover the Origins of Genomic "Dark Matter"". Penn State Science. Archived from the original on 2015-09-08. Retrieved 2015-09-09.
  7. ^ "Scientists shed some light on biological "dark matter"". Ecole Polytechnique Federale de Lausanne. 20 January 2014. Retrieved 2015-09-09.
  8. PMID 20502517
    .
  9. .
  10. .
  11. . Retrieved August 23, 2015.
  12. ^ Kemsley T (13 July 2015). "New Study on "Dark Matter" of Biology Fills in Major Holes in Tree of Life". Nature World News. Retrieved 2015-09-09.
  13. PMID 25627841
    .
  14. ^ Lok C (16 June 2015). "Mining the microbial dark matter". Nature News. Retrieved 2015-09-09.
  15. ^ Check-Hayden E (14 July 2013). "Researchers glimpse microbial 'dark matter'". Nature News. Retrieved 2015-09-09.
  16. ^ Gronstal AL (4 November 2011). "Studying Biology's Dark Matter". NASA Astrobiology Institute. Retrieved 2015-09-09.
  17. ^ Rinke C (2015). "What is Microbial Dark Matter and why should we explore it?". Microbial Dark Matter. Archived from the original on 2018-10-22. Retrieved 2015-09-09.
  18. PMID 26085253
    .
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  20. .
  21. .
  22. .
  23. .
  24. .
  25. .
  26. .
  27. ^ .
  28. .
  29. ^ .
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  31. .
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  33. .
  34. .
  35. ^ Achenbach, Joel (21 February 2023). "Strange DNA found in the desert offers lessons in the hunt for Mars life". The Washington Post. Retrieved 21 February 2023.
  36. PMID 36810853
    .