Hepadnaviridae
Hepadnaviridae | |
---|---|
TEM micrograph showing Hepatitis B virus virions | |
Virus classification | |
(unranked): | Virus |
Realm: | Riboviria |
Kingdom: | Pararnavirae |
Phylum: | Artverviricota |
Class: | Revtraviricetes |
Order: | Blubervirales |
Family: | Hepadnaviridae |
Genera[1] | |
Hepadnaviridae
Taxonomy
The following genera are recognized:[citation needed]
History and discovery
Although liver diseases transmissible among human populations were identified early in the history of medicine, the first known hepatitis with a viral etiological agent was Hepatitis A, in the
Genome
Hepadnaviruses have very small genomes of partially double-stranded, partially single stranded circular DNA (pdsDNA). The genome consists of two strands, a longer negative-sense strand and a shorter and positive-sense strand of variable length. In the virion these strands are arranged such that the two ends of the long strand meet but are not covalently bonded together. The shorter strand overlaps this divide and is connected to the longer strand on either side of the split through a direct repeat (DR) segment that pairs the two strands together. In replication, the viral pdsDNA is converted in the host cell nucleus to covalently-closed-circular DNA (cccDNA) by the viral polymerase.[citation needed]
Replication involves an
Viral polymerase
Members of the family Hepadnaviridae encode their own polymerase, rather than co-opting host machinery as some other viruses do. This enzyme is unique among viral polymerases in that it has reverse transcriptase activity to convert RNA into DNA to replicate the genome (the only other human-pathogenic virus family encoding a polymerase with this capability is
Envelope proteins
The hepatitis envelope proteins are composed of subunits made from the viral preS1, preS2, and S genes. The L (for "large") envelope protein contains all three subunits. The M (for "medium") protein contains only preS2 and S. The S (for "small") protein contains only S. The genome portions encoding these envelope protein subunits share both the same frame and the same stop codon, generating nested transcripts on a single open reading frame. The pre-S1 is encoded first (closest to the 5' end), followed directly by the pre-S2 and the S. When a transcript is made from the beginning of the pre-S1 region, all three genes are included in the transcript and the L protein is produced. When the transcript starts after the pro-S1 at the beginning of the pre-S2 the final protein contains the pre-S2 and S subunits only and therefore is an M protein. The smallest envelope protein containing just the S subunit is made most because it is encoded closest to the 3' end and comes from the shortest transcript. These envelope proteins can assemble independently of the viral capsid and genome into non-infectious virus-like particles that give the virus a pleomorphic appearance and promote a strong immune response in hosts.[citation needed]
Replication
Hepadnaviruses replicate through an RNA intermediate (which they transcribe back into cDNA using reverse transcriptase). The reverse transcriptase becomes covalently linked to a short 3- or 4-nucleotide primer.[6] Most hepadnaviruses will only replicate in specific hosts, and this makes experiments using in vitro methods very difficult.
The virus binds to specific receptors on cells and the core particle enters the cell
Genus | Host details | Tissue tropism | Entry details | Release details | Replication site | Assembly site | Transmission |
---|---|---|---|---|---|---|---|
Avihepadnavirus | Birds | Hepatocytes | Cell receptor endocytosis | Budding | Nucleus | Cytoplasm | Vertical: parental; sex; blood |
Orthohepadnavirus | Humans; mammals | Hepatocytes | Cell receptor endocytosis | Budding | Nucleus | Cytoplasm | Vertical: parental; sex; blood |
Structure
Viruses in Hepadnaviridae are enveloped, with spherical geometries, and T=4 symmetry. The diameter is around 42 nm. Genomes are circular, around 3.2kb in length. The genome codes for 7 proteins.[3][4]
Genus | Structure | Symmetry | Capsid | Genomic arrangement | Genomic segmentation |
---|---|---|---|---|---|
Avihepadnavirus | Icosahedral | T=4 | Enveloped | Circular | Monopartite |
Orthohepadnavirus | Icosahedral | T=4 | Enveloped | Circular | Monopartite |
Evolution
Based on the presence of viral genomes in bird DNA it appears that the hepadnaviruses evolved >82 million years ago.[7] Birds may be the original hosts of the Hepadnaviridae with mammals becoming infected after a bird (see host switch).
Endogenous hepatitis B virus genomes have been described in crocodilian, snake and turtle genomes.[8] This suggests that these viruses have infected vertebrates for over 200 million years ago.[citation needed]
Hepadnaviruses have been described in fish and amphibians also.[9] This suggests that this family has co-evolved with the vertebrates.[citation needed]
Phylogenetic trees suggest that the bird viruses originated from those infecting reptiles. Those affecting mammals appear to be more closely related to those found in fish.[10]
A proposed family of viruses – the Nackednaviridae – has been isolated from fish. This family has a similar genomic organisation to that of members of the family Hepadnaviridae. These two families separated over 400 million years ago, suggesting an ancient origin for the family Hepadnaviridae.[10]
Viruses in the family have non-enveloped, isosahedral structure with T=3 symmetry, smaller than typical Hepadnaviridae virions (about 5% of the latter show a T=3 symmetry). The circular, monopartite genome is about 3 kb much like Hepadnaviridae. The envelop protein S is accordingly not present, likely the ancestral state by sequence analysis. Unlike Hepadnaviridae viruses that usually diverge alongside their hosts, viruses in the family jump hosts more frequently.[10] The "type" for this family is African cichlid nackednavirus (ACNDV), formerly African cichlid hepadnavirus (ACHBV), a proposed and not-yet-accepted species.[9]
Cell tropism
Hepadnaviruses, as their "hepa" name implies, infect liver cells and cause hepatitis. This is true not only of the human pathogen Hepatitis B Virus but also the hepadnaviruses that infect other organisms. The "adhesion" step of the dynamic phase—in which an exterior viral protein stably interacts with a host cell protein—determines cell tropism. In the case of HBV the host receptor is human sodium taurocholate receptor (
See also
Notes
References
- ^ "Virus Taxonomy: 2018b Release". International Committee on Taxonomy of Viruses (ICTV). February 2019. Retrieved 14 March 2019.
- PMID 32416744.
- ^ a b c "ICTV Report Hepadnaviridae".
- ^ a b "Viral Zone". ExPASy. Retrieved 15 June 2015.
- ^ "World War II Hepatitis Outbreak Was Biggest in History". AP NEWS. Retrieved 21 June 2023.
- PMID 15163718.
- PMID 23653203.
- PMID 25501991.
- ^ PMID 27334580.
- ^ PMID 28867387.
- PMID 23150796.
External links
- ICTV Report: Hepadnaviridae
- Viralzone: Hepadnaviridae
- "Hepadnaviridae". NCBI Taxonomy Browser. 10404.