Jmol
mol_logo_2013.svg){kind=logo} | |
 Jmol three-dimensional structure rendering of streptavidin | |
| Developer(s) | Jmol development team |
|---|---|
| Initial release | 2001 |
| Stable release | 16.1.59 
/ 26 February 2024 |
Cross-platform | |
| Platform | Systems with Java and Web browsers without Java |
| Available in | 16 languages |
List of languages Catalan, Chinese, Czech, Danish, Dutch, English, French, German, Hungarian, Indonesian, Italian, Korean, Portuguese, Spanish, Turkish, Ukrainian[1] | |
| Type | Molecular modelling |
| License | LGPL 2.0 |
| Website | www |
Jmol is computer software for molecular modelling chemical structures in 3-dimensions.[2] Jmol returns a 3D representation of a molecule that may be used as a teaching tool,[3] or for research e.g., in chemistry and biochemistry.
Software
It is written in the programming language Java, so it can run on the operating systems Windows, macOS, Linux, and Unix, if Java is installed. It is free and open-source software released under a GNU Lesser General Public License (LGPL) version 2.0. A standalone application and a software development kit (SDK) exist that can be integrated into other Java applications, such as Bioclipse and Taverna.
A popular feature is an applet that can be integrated into web pages to display molecules in a variety of ways. For example, molecules can be displayed as ball-and-stick models, space-filling models, ribbon diagrams, etc.[4] Jmol supports a wide range of
The Jmol applet, among other abilities, offers an alternative to the
.Screenshots
-
Crystal structure of an H/ACA box RNP from Pyrococcus furiosus. -
Highlighting two salt bridges in hemoglobin tetramer (hemo group as sticks at bottom-right). -
A fragment of transcription factor TFIIIA forming three consecutive zinc finger motifs, bound to a stretch of DNA. -
Eubacterial 70S Ribosome from Thermus thermophilus.
See also
- Chemistry Development Kit (CDK)
- Comparison of software for molecular mechanics modeling
- List of free and open-source software packages
- List of molecular graphics systems
- Molecular graphics
- Molecule editor
- Proteopedia
- PyMOL
- SAMSON
- SMILES
References
- ^ Jmol translations
- ISBN 978-1-84800-900-4
- ^ S2CID 36319720
- ISBN 978-1-84799-259-8
- ^ "JSmol". Archived from the original on 2018-01-01. Retrieved 2015-11-02.
External links
- Official website
- Willighagen, Egon; Howard, Miguel (June 2007). "Fast and Scriptable Molecular Graphics in Web Browsers without Java3D". Nature Precedings. .
- Jmol extension for MediaWiki
- Biomodel
- Molview