List of sequenced bacterial genomes
This list of sequenced eubacterial genomes contains most of the
Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature.
For the genomes of archaea see list of sequenced archaeal genomes.
Abditibacteriota
Species | Strain | Type | Base Pairs | Genes | Reference | GenBank Identifier |
---|---|---|---|---|---|---|
Abditibacterium utsteinense | LMG 29911 | Abditibacteriota | 3,606,330 | 3,240 | 2018[2] | NZ_NIGF00000000.1 |
Actinomycetota
Species | Strain | Type | Base Pairs | Genes | Reference | GenBank Identifier |
---|---|---|---|---|---|---|
Corynebacterium diphtheriae | C7 (beta) | Actinobacteridae
|
2,499,189 | Unpublished | CP003210 | |
Corynebacterium diphtheriae | PW8 | Actinobacteridae
|
2,530,683 | Unpublished | CP003216 | |
Bifidobacterium longum | NCC2705 | Actinobacteria | 2,256,640 | 1,727 | 2002[3] | |
Corynebacterium diphtheriae | NCTC13129 | Actinobacteria | 2,488,635 | 2,320 | 2003[4] | |
Corynebacterium efficiens | YS314 | Actinobacteria | 3,147,090 | 2,942 | 2003[5] | |
Corynebacterium glutamicum | ATCC13032 | Actinobacteria | 3,309,401 | 3,099 | Unpublished[1] | |
Corynebacterium jeikeium | K411 | Actinobacteria | 2,462,499 | 2,104 | 2005[6] | |
Frankia species | CcI3 | Actinobacteria | 5,433,628 | 4,499 | Unpublished[1] | |
Mycobacterium avium | k10 | Actinobacteria | 4,829,781 | 4,350 | 2005[7] | |
Mycobacterium bovis | AF212297 | Actinobacteria | 4,345,492 | 3,953 | 2003[8] | |
Mycobacterium leprae | TN | Actinobacteria | 3,268,203 | 2,720 | 2001[9] | |
Mycobacterium tuberculosis | CDC1551 | Actinobacteria | 4,403,837 | 4,189 | Unpublished[1] | |
Mycobacterium tuberculosis | H37Rv | Actinobacteria | 4,411,532 | 3,999 | 1998[10] | |
Nocardia farcinica | IFM10152 | Actinobacteria | 6,021,225 | 5,683 | 2004[11] | |
Streptomyces avermitilis | MA4680 | Actinobacteria | 9,025,608 | 7,577 | 2001[12] | |
Streptomyces coelicolor
|
A3 | Actinobacteria | 8,667,507 | 7,825 | 1996[13] | |
Symbiobacterium thermophilum | Strain | Actinobacteria | 3,566,135 | 3,337 | 2004[14] | |
Thermobifida fusca | YX | Actinobacteria | 3,642,249 | 3,110 | Unpublished[1] |
Aquificota
Species | Strain | Type | Base Pairs | Genes | Reference | GenBank Identifier |
---|---|---|---|---|---|---|
Aquifex aeolicus | VF5 | Aquificae
|
1,551,335 | 1,522 | 1998[15] | Chromosome NC_000918 Plasmid ece1 NC_001880 |
Armatimonadota
Chlorobiota group
Species | Strain | Type | Base Pairs | Genes | Reference | GenBank Identifier |
---|---|---|---|---|---|---|
Bacteroides fragilis | NCTC9343 | Bacteroidota | 5,205,140 | 4,260 | 2005[16] | Chromosome CR626927 Plasmid pBF9343 CR626928 |
Bacteroides fragilis | YCH46 | Bacteroidota | 5,277,274 | 4,578 | 2004[17] | Chromosome AP006841 Plasmid pBFY46 AP006842 |
Bacteroides thetaiotaomicron | VPI-5482 | Bacteroidota | 6,260,361 | 4,778 | 2003[18] | Chromosome AE015928 Plasmid p5482 AY171301 |
Candidatus Amoebophilus asiaticus | 5a2 | Bacteroidota | 1,884,364 | 2010[19] | CP001102 | |
Chlorobaculum parvum | NCIB 8327 | Chlorobiota
|
2,289,249 | DOE Joint Genome Institute
|
CP001099 | |
Chlorobium chlorochromatii | CaD3 | Chlorobiota
|
2,572,079 | 2,002 | DOE Joint Genome Institute | CP000108 |
Chlorobium ferrooxidans | DSM 13031 | Chlorobiota
|
DOE Joint Genome Institute | AASE00000000 | ||
Chlorobium limicola | DSM 245 | Chlorobiota
|
2,763,181 | DOE Joint Genome Institute | NC_010803 | |
Chlorobium phaeobacteroides | BS1 | Chlorobiota
|
2,736,403 | DOE Joint Genome Institute | NC_010831 | |
Chlorobium phaeobacteroides | DSM 266 | Chlorobiota
|
3,133,902 | DOE Joint Genome Institute | NC_008639 | |
Chlorobium phaeovibrioides | DSM 265 | Chlorobiota
|
1,966,858 | DOE Joint Genome Institute | NC_009337 | |
tepidum
|
TLS | Chlorobiota
|
2,154,946 | 2,255 | 2002[20] | AE006470 |
Chloroherpeton thalassium | ATCC 35110 | Chlorobiota
|
3,293,456 | DOE Joint Genome Institute | CP001100 | |
Cytophaga hutchinsonii | ATCC 33406 | Chlorobiota
|
4,433,218 | 2007[21] | CP000383 | |
Haliscomenobacter hydrossis | DSM 1100 | Bacteroidota | 8,371,686 | 2011[22] | Chromosome CP002691 Plasmid pHALHY01 CP002692 | |
Ignavibacterium album | JCM 16511 | Ignavibacteriota
|
3,658,997 | University of Copenhagen | CP003418 | |
Pelodictyon luteolum (Chlorobium luteolum) | DSM 273 | Chlorobiota
|
2,364,842 | 2,083 | DOE Joint Genome Institute | CP000096 |
Pelodictyon phaeoclathratiforme | BU-1 | Chlorobiota
|
3,018,238 | DOE Joint Genome Institute | CP001110 | |
Porphyromonas gingivalis | ATCC 33277 | Bacteroidota | 2,354,886 | 2008[23] | NC_010729 | |
Porphyromonas gingivalis | W83 | Bacteroidota | 2,343,476 | 1,909 | 2003[24] | NC_002950 |
Prosthecochloris aestuarii | DSM 271 | Chlorobiota
|
2,512,923 | DOE Joint Genome Institute | Chromosome CP001108 Plasmid pPAES01 CP001109 | |
Salinibacter ruber | DSM 13855 | Bacteroidota | 3,551,823 | 2,801 | [25] | NC_007677 |
Salinibacter ruber | M8 | Bacteroidota | 3,619,447 | [26] | Chromosome FP565814 Plasmid pSR11 FP565810 | |
Saprospira grandis | str. Lewin | Bacteroidota | 4,345,237 | University of Hawaii at Manoa | Chromosome CP002831 Plasmid CP002832 |
Caldisericota
Chlamydiota/Verrucomicrobiota group
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Akkermansia muciniphila | ATCC BAA-835 | Verrucomicrobiota | 2,664,102 | 2,176 | [27] |
Akkermansia muciniphila | Urmite | Verrucomicrobiota | 2,664,714 | 2,192 | [28] |
Chlamydia muridarum
|
Nigg | Chlamydiota | 1,072,950 | 904 | [29] |
Chlamydia trachomatis
|
AHAR13 | Chlamydiota | 1,044,459 | 911 | [30] |
Chlamydia trachomatis
|
DUW | Chlamydiota | 1,042,519 | 894 | [31] |
abortus
|
S26-3 | Chlamydiota | 1,144,377 | 961 | [32] |
caviae
|
GPIC | Chlamydiota | 1,173,390 | 998 | [33] |
felis
|
FeC56 | Chlamydiota | 1,166,239 | 1,005 | [34] |
pneumoniae
|
AR39 | Chlamydiota | 1,229,853 | 1,110 | [29] |
pneumoniae
|
CWL029 | Chlamydiota | 1,230,230 | 1,052 | [35] |
pneumoniae
|
J138 | Chlamydiota | 1,226,565 | 1,069 | [36] |
pneumoniae
|
TW183 | Chlamydiota | 1,225,935 | 1,113 | ALTANA Pharma |
Parachlamy diaspecies | UWE25 | Chlamydiota | 2,414,465 | 2,031 | [37] |
Chloroflexota
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Dehalococcoides mccartyi | 195 | Dehalococcoidetes
|
1,469,720 | 1,580 | [38] |
Dehalococcoides mccartyi | CBDB1 | Dehalococcoidetes
|
1,395,502 | 1,458 | [39] |
Dehalococcoides mccartyi | DCMB5 | Dehalococcoidetes
|
1,431,902 | 1,526 | [40] |
Dehalococcoides mccartyi | BTF08 | Dehalococcoidetes
|
1,452,335 | 1,580 | [40] |
Chrysiogenota
Cyanobacteria
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Anabaena nostoc | PCC7120 | Nostocales | 6,413,771 | 5,368 | [41] |
Anabaena variabilis | ATCC29413 | Nostocales | 6,365,727 | 5,039 | DOE Joint Genome Institute |
Cyanobacteria bacterium | YellowstoneA | Chroococcales | 2,932,766 | 2,760 | [42] |
Cyanobacteria bacterium | YellowstoneB | Chroococcales | 3,046,682 | 2,862 | [42] |
Gloeobacter violaceus
|
PCC7421 | Gloeobacteria
|
4,659,019 | 4,430 | [43] |
Prochlorococcus marinus
|
MED4 | Prochlorales | 1,657,990 | 1,716 | [44] |
Prochlorococcus marinus
|
MIT9312 | Prochlorales | 1,709,204 | 1,809 | Unpublished[1] |
Prochlorococcus marinus
|
MIT9313 | Prochlorales | 2,410,873 | 2,273 | [44] |
Prochlorococcus marinus
|
NATL2A | Prochlorales | 1,842,899 | 1,890 | Unpublished[1] |
Prochlorococcus marinus
|
SS120 | Prochlorales | 1,751,080 | 1,882 | [45] |
Synechococcus elongatus | PCC6301 | Chroococcales | 2,696,255 | 2,525 | Unpublished[1] |
Synechococcus elongatus | PCC7942 | Chroococcales | 2,695,903 | 2,611 | Unpublished[1] |
Synechococcus species | WH8102 | Chroococcales | 2,434,428 | 2,526 | [46] |
Synechococcus species | CC9605 | Chroococcales | 2,510,659 | 2,638 | Unpublished[1] |
Synechococcus species | CC9902 | Chroococcales | 2,234,828 | 2,304 | Unpublished[1] |
Synechocystis species | PCC6803 | Chroococcales | 3,573,470 | 3,167 | [47] |
elongatus
|
bp1 | Chroococcales | 2,593,857 | 2,475 | Unpublished[1] |
Deferribacterota
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Geovibrio sp. | Deferribacterota
|
2,971,658 | 2,415 | DOE Joint Genome Institute | |
Mucispirillum schaedleri
|
ASF457 | Deferribacterota
|
2,319,180 | 2,144 | Broad Institute |
Denitrovibrio acetiphilus | DSM 12809 | Deferribacterota
|
3,222,077 | 3,068 | [48] |
Calditerrivibrio nitroreducens | DSM 19672 | Deferribacterota
|
2,157,835 | 2,117 | [49] |
Deferribacter desulfuricans | SSM1 | Deferribacterota
|
2,234,389 | 2,184 | [50] |
Flexistipes sinusarabici | DSM 4947 | Deferribacterota
|
2,526,590 | 2,397 | [51] |
Deinococcota
Species | Strain | Type | Base Pairs | Genes | Reference | GenBank Identifier |
---|---|---|---|---|---|---|
Deinococcus deserti | VCD115 | Deinococcales
|
2,819,842 | [52] | Chromosome NC_012526 | |
Deinococcus geothermalis | DSM 11300 | Deinococcales
|
2,467,205 | 2,335 | DOE Joint Genome Institute | Chromosome CP000359 |
Deinococcus gobiensis | I-0 | Deinococcales
|
3,137,147 | [53] | Chromosome CP002191 Plasmid P1 CP002192 | |
Deinococcus maricopensis | DSM 21211 | Deinococcales
|
3,498,530 | US DOE Joint Genome Institute | CP002454 | |
Deinococcus proteolyticus | MRP | Deinococcales
|
2,147,060 | US DOE Joint Genome Institute | Chromosome CP002536 Plasmid pDEIPR01 CP002537 | |
Deinococcus radiodurans | R1 | Deinococcales
|
Chromosome 1: 2,648,638 Chromosome 2: 412,348 |
Chromosome 1: 2,579 Chromosome 2: 357 |
[54] | Chromosome 1 NC_001263 Chromosome 2 NC_001264 |
Marinithermus hydrothermalis | DSM 14884 | Thermales
|
2,269,167 | DOE Joint Genome Institute | CP002630 | |
Meiothermus ruber | DSM 1279 | Thermales
|
3,097,457 | DOE Joint Genome Institute | CP001743 | |
Meiothermus silvanus | DSM 9946 | Thermales
|
3,249,394 | [55] | Chromosome CP002042 | |
Oceanithermus profundus | DSM 14977 | Thermales
|
2,303,940 | DOE Joint Genome Institute | Chromosome CP002361 Plasmid pOCEPR01 | |
Thermus scotoductus | SA-01 | Thermales
|
2,346,803 | [56] | Chromosome CP001962 Plasmid pTSC8 CP001963 | |
Thermus species | CCB_US3_UF1 | Thermales
|
2,243,772 | Universiti Sains Malaysia | Chromosome CP003126 Plasmid pTCCB09 CP003127 | |
Thermus thermophilus | HB27 | Thermales
|
1,894,877 | 1,982 | [57] | Chromosome AE017221 Plasmid pTT27 AE017222 |
Thermus thermophilus | HB8 | Thermales
|
1,849,742 | 1,973 | Nara Institute of Science and Technology | Chromosome NC_006461 |
Thermus thermophilus | JL-18 | Thermales
|
1,902,595 | DOE Joint Genome Institute | Chromosome CP003252 | |
Thermus thermophilus | SG0.5JP17-16 | Thermales
|
1,863,201 | DOE Joint Genome Institute | Chromosome CP002777 Plasmid pTHTHE1601 CP002778 | |
Truepera radiovictrix | DSM 17093 | Deinococcales
|
3,260,398 | DOE Joint Genome Institute | CP002049 |
Dictyoglomota
Elusimicrobiota
Fibrobacterota/Acidobacteriota group
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Acidobacteria bacterium | Ellin345 | Acidobacteriota | 5,650,368 | 4,777 | Unpublished[1] |
Leifsonia xyli | CTCB07 | Acidobacteriota | 2,584,158 | 2,030 | [58] |
Propionibacterium acnes
|
KPA171202 | Acidobacteriota | 2,560,265 | 2,297 | [59] |
Rubrobacter xylanophilus | DSM9941 | Acidobacteriota | 3,225,748 | 3,140 | DOE Joint Genome Institute |
Tropheryma whippelii
|
TW08/27 | Acidobacteriota | 925,938 | 784 | [60] |
Tropheryma whippelii
|
Twist | Acidobacteriota | 927,303 | 808 | [61] |
Bacillota
Fusobacteriota
Species | Strain | Type | Base Pairs | Genes | Reference | GenBank Identifier |
---|---|---|---|---|---|---|
Fusobacterium nucleatum | ATCC25586 | Fusobacteria | 2,174,500 | 2,067 | [106] | |
Fusobacterium sp. | 11_3_2 | Fusobacteria | Unpublished | ACUO00000000 | ||
Fusobacterium sp. | 21_1A | Fusobacteria | Unpublished | ADEE00000000 |
Gemmatimonadota
Nitrospirota
Planctomycetota
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Rhodopirellula baltica | strain1 | Planctomycetes Planctomycetacia | 7,145,576 | 7,325 | Unpublished[1] |
Pseudomonadota
Alphaproteobacteria
Betaproteobacteria
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Azoarcus sp. | EbN1 | Betaproteobacteria | 4,296,230 | 4,128 | 2002[134] |
Bordetella bronchiseptica | RB50 | Betaproteobacteria | 5,339,179 | 5,006 | Unpublished[1] |
Bordetella parapertussis | 12822 | Betaproteobacteria | 4,773,551 | 4,402 | Unpublished[1] |
Bordetella pertussis | TohamaI | Betaproteobacteria | 4,086,189 | 3,806 | Unpublished[1] |
Burkholderia cenocepacia | AU1054 | Betaproteobacteria | 3,294,563 | 2,965 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 2,788,459 | 2,472 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 1,196,094 | 1,040 | Unpublished[1] |
Burkholderia mallei | ATCC23344 | Betaproteobacteria | 3,510,148 | 2,996 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 2,325,379 | 2,029 | 2004[135] |
Burkholderia pseudomallei | 1710b | Betaproteobacteria | 4,126,292 | 3,736 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 3,181,762 | 2,611 | Unpublished[1] |
Burkholderia pseudomallei | K96243 | Betaproteobacteria | 4,074,542 (chromosome I) 3,173,005 (chromosome II) |
3,460 (chromosome I) 2,395 (chromosome II) |
2004[85] |
Burkholderia species | 383 | Betaproteobacteria | 3,694,126 | 3,334 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 3,587,082 | 3,174 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 1,395,069 | 1,209 | Unpublished[1] |
Burkholderia thailandensis | E264 | Betaproteobacteria | 3,809,201 | 3,276 | 2005[136] |
Unspecified | Unspecified | Betaproteobacteria | 2,914,771 | 2,358 | 2005[136] |
Burkholderia xenovorans
|
LB400 | Betaproteobacteria | 4,895,836 | 4,430 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 3,363,523 | 2,960 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 1,471,779 | 1,312 | Unpublished[1] |
Chromobacterium violaceum | ATCC12472 | Betaproteobacteria | 4,751,080 | 4,407 | 2003[137] |
Dechloromonas aromatica | RCB | Betaproteobacteria | 4,501,104 | 4,171 | Unpublished[1] |
Methylobacillus flagellatus | KT | Betaproteobacteria | 2,971,517 | 2,753 | Unpublished[1] |
Neisseria gonorrhoeae | FA1090 | Betaproteobacteria | 2,153,922 | 2,002 | Unpublished[1] |
Neisseria meningitidis | serogroup A strain Z2491 | Betaproteobacteria | 2,184,406 | 2,121 | 2000[138] |
Neisseria meningitidis | serogroup B strain MC58 | Betaproteobacteria | 2,272,360 | 2,063 | 2000[139] |
Nitrosomonas europaea | Schmidt | Betaproteobacteria | 2,812,094 | 2,574 | 2003[140] |
Nitrosospira multiformis | ATCC25196 | Betaproteobacteria | 3,184,243 | 2,757 | Unpublished[1] |
Polaromonas species | JS666 | Betaproteobacteria | 5,200,264 | 4,817 | Unpublished[1] |
Ralstonia eutropha
|
JMP134 | Betaproteobacteria | 3,806,533 | 3,439 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 2,726,152 | 2,407 | Unpublished[1] |
Ralstonia metallidurans
|
CH34 | Betaproteobacteria | 3,928,089 | 3,601 | Unpublished[1] |
Unspecified | Unspecified | Betaproteobacteria | 2,580,084 | 2,313 | Unpublished[1] |
Ralstonia solanacearum | GMI1000 | Betaproteobacteria | 3,716,413 | 3,441 | 2002[141] |
Unspecified | Unspecified | Betaproteobacteria | 2,094,509 | 1,679 | [141] |
Rhodoferax ferrireducens | DSM15236 | Betaproteobacteria | 4,712,337 | 4,170 | Unpublished[1] |
Thiobacillus denitrificans | ATCC25259 | Betaproteobacteria | 2,909,809 | 2,827 | Unpublished[1] |
Gammaproteobacteria
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Acinetobacter sp. | ADP1 | Gammaproteobacteria | 3,598,621 | 3,325 | 2004[142] |
Baumannia cicadellinicola | Hc | Gammaproteobacteria | 686,194 | 595 | Unpublished[1] |
Blochmannia floridanus | Strain | Gammaproteobacteria | 705,557 | 589 | 2003[143] |
Blochmannia pennsylvanicus | bpEN | Gammaproteobacteria | 791,654 | 610 | 2005[144] |
Buchnera aphidicola | APS | Gammaproteobacteria | 640,681 | 564 | 2000[145] |
Buchnera aphidicola | B | Gammaproteobacteria | 615,980 | 504 | 2003[146] |
Buchnera aphidicola | Sg | Gammaproteobacteria | 641,454 | 545 | 2002[147] |
Carsonella ruddii | PV | Gammaproteobacteria | 159,662 | 182 | 2006[148] |
Chromohalobacter salexigens | DSM3043 | Gammaproteobacteria | 3,696,649 | 3,298 | Unpublished[1] |
Colwellia psychrerythraea | 34H | Gammaproteobacteria | 5,373,180 | 4,910 | Unpublished[1] |
Coxiella burnetii | RSA493 | Gammaproteobacteria | 1,995,281 | 2,016 | 2003[149] |
Erwinia carotovora
|
SCRI1043 | Gammaproteobacteria | 5,064,019 | 4,492 | Unpublished[1] |
Escherichia coli | 536 | Gammaproteobacteria | 4,938,920 | 4,685 | Unpublished[1] |
Escherichia coli | CFT073 | Gammaproteobacteria | 5,231,428 | 5,379 | 2002[150] |
Escherichia coli | K-12 | Gammaproteobacteria | 4,639,675 (4,646,332) | 4,331 (4,337) | 1997,[151] 2005[152] |
Escherichia coli | O157:H7 | Gammaproteobacteria | 5,528,445 (5,498,450) | 5,349 (5,361) | 2001,[153] 1999[154] |
Escherichia coli | UTI89 | Gammaproteobacteria | 5,065,741 | 5,066 | Unpublished[1] |
Francisella tularensis | LVS | Gammaproteobacteria | 1,895,994 | 1,967 | Unpublished[1] |
Francisella tularensis | SCHUS4 | Gammaproteobacteria | 1,892,819 | 1,804 | 2005[155] |
Haemophilus ducreyi | 3500HP | Gammaproteobacteria | 1,698,955 | 1,717 | Unpublished[1] |
Haemophilus influenzae | 86-028NP | Gammaproteobacteria | 1,913,428 | 1,792 | 2005[156] |
Haemophilus influenzae | Rd | Gammaproteobacteria | 1,830,138 | 1,709 | 1995[157] |
Hahella chejuensis | KCTC2396 | Gammaproteobacteria | 7,215,267 | 6,782 | 2005[158] |
Idiomarina loihiensis | L2TR | Gammaproteobacteria | 2,839,318 | 2,628 | 2004[159] |
Legionella pneumophila | Lens | Gammaproteobacteria | 3,345,687 | 2,947 | 2004[160] |
Legionella pneumophila | Paris | Gammaproteobacteria | 3,503,610 | 3,082 | 2004[160] |
Legionella pneumophila | Philadelphia1 | Gammaproteobacteria | 3,397,754 | 2,942 | Unpublished[1] |
Mannheimia succiniciproducens | MBEL55E | Gammaproteobacteria | 2,314,078 | 2,384 | Unpublished[1] |
Methylococcus capsulatus | Bath | Gammaproteobacteria | 3,304,561 | 2,960 | 2004[161] |
Nitrosococcus oceani | ATCC19707 | Gammaproteobacteria | 3,481,691 | 2,976 | Unpublished[1] |
Pasteurella multocida | Pm70 | Gammaproteobacteria | 2,257,487 | 2,014 | 2001[162] |
Photobacterium profundum | SS9 | Gammaproteobacteria | 4,085,304 | 3,416 | Unpublished[1] |
Unspecified | Unspecified | Gammaproteobacteria | 2,237,943 | 1,997 | Unpublished[1] |
Photorhabdus luminescens | laumondiiTTO1 | Gammaproteobacteria | 5,688,987 | 4,905 | Unpublished[1] |
Pseudoalteromonas haloplanktis | TAC125 | Gammaproteobacteria | 3,214,944 | 2,941 | 2005[163] |
Unspecified | Unspecified | Gammaproteobacteria | 635,328 | 546 | [163] |
Pseudomonas aeruginosa | VRFPA04 | Gammaproteobacteria | 6,818,030 | 5,939 | 2016[164] |
Pseudomonas entomophila | L48 | Gammaproteobacteria | 5,888,780 | 5,168 | Unpublished[1] |
Pseudomonas fluorescens | Pf-5 | Gammaproteobacteria | 7,074,893 | 6,137 | 2005[165] |
Pseudomonas fluorescens | PfO-1 | Gammaproteobacteria | 6,438,405 | 5,736 | Unpublished[1] |
Pseudomonas putida | KT2440 | Gammaproteobacteria | 6,181,863 | 5,350 | 2002[166] |
Pseudomonas syringae | B728a | Gammaproteobacteria | 6,093,698 | 5,136 | 2005[167] |
Pseudomonas syringae | DC3000 | Gammaproteobacteria | 6,397,126 | 5,470 | 2003[168] |
Pseudomonas syringae | phaseolicola1448A | Gammaproteobacteria | 5,928,787 | 4,983 | Unpublished[1] |
Psychrobacter arcticum | 273-4 | Gammaproteobacteria | 2,650,701 | 2,147 | Unpublished[1] |
Psychrobacter cryohalolentis | K5 | Gammaproteobacteria | ~3.1Mb | 2,575 | [169] |
Unspecified | Unspecified | Gammaproteobacteria | 3,059,876 | 2,467 | Unpublished[1] |
Saccharophagus degradans
|
Feb-40 | Gammaproteobacteria | 5,057,531 | 4,008 | Unpublished[1] |
Salmonella enterica | ATCC9150 | Gammaproteobacteria | 4,585,229 | 4,093 | 2004[170] |
Salmonella enterica | SCB67 | Gammaproteobacteria | 4,755,700 | 4,445 | 2005[171] |
Salmonella enterica | Ty2 | Gammaproteobacteria | 4,791,961 | 4,323 | 2003[172] |
Salmonella enterica | typhiCT18 | Gammaproteobacteria | 4,809,037 | 4,600 | 2001[173] |
Salmonella typhimurium
|
LT2 | Gammaproteobacteria | 4,857,432 | 4,452 | 2001[174] |
Shewanella denitrificans | OS217 | Gammaproteobacteria | 4,545,906 | 3,754 | Unpublished[1] |
Shewanella oneidensis | MR1 | Gammaproteobacteria | 4,969,803 | 4,630 | 2002[175] |
Shigella boydii | Sb227 | Gammaproteobacteria | 4,519,823 | 4,142 | 2005[176] |
Shigella dysenteriae | Sd197 | Gammaproteobacteria | 4,369,232 | 4,277 | 2005[176] |
Shigella flexneri | 2457T | Gammaproteobacteria | 4,599,354 | 4,073 | 2003[177] |
Shigella flexneri | 2a301 | Gammaproteobacteria | 4,607,203 | 4,436 | 2002[178] |
Shigella sonnei | Ss046 | Gammaproteobacteria | 4,825,265 | 4,224 | 2005[176] |
Sodalis glossinidius | morsitans | Gammaproteobacteria | 4,171,146 | 2,432 | 2006[179] |
Thiomicrospira crunogena
|
XCL2 | Gammaproteobacteria | 2,427,734 | 2,192 | Unpublished[1] |
Vibrio cholerae | N16961 | Gammaproteobacteria | 2,961,149 (chromosome I) 1,072,315 (chromosome II) |
2,736 (chromosome I) 1,092 (chromosome II) |
2000[180] |
Vibrio fischeri
|
ES114 | Gammaproteobacteria | 2,906,179 (chromosome I) 1,332,022 (chromosome II) |
2,575 (chromosome I) 1,172 (chromosome II) |
2005[181] |
Vibrio parahaemolyticus | RIMD2210633 | Gammaproteobacteria | 3,288,558 (chromosome I) 1,877,212 (chromosome II) |
3,080 (chromosome I) 1,752 (chromosome II) |
2000[182] |
Vibrio vulnificus | CMCP6 | Gammaproteobacteria | 3,281,944 (chromosome I) 1,844,853 (chromosome II) |
2,973 (chromosome I) 1,565 (chromosome II) |
2003[183] |
Vibrio vulnificus | YJ016 | Gammaproteobacteria | 3,354,505 (chromosome I) 1,857,073 (chromosome II) |
3,262 (chromosome I) 1,697 (chromosome II) |
2003[184] |
Wigglesworthia glossinidia | Strain | Gammaproteobacteria | 697,724 | 611 | 2002[185] |
Xanthomonas axonopodis
|
citri306 | Gammaproteobacteria | 5,175,554 | 4,312 | 2002[186] |
Xanthomonas campestris | 8004 | Gammaproteobacteria | 5,148,708 | 4,273 | 2005[187] |
Xanthomonas campestris | 8510 | Gammaproteobacteria | 5,178,466 | 4,487 | 2005[188] |
Xanthomonas campestris | ATCC33913 | Gammaproteobacteria | 5,076,188 | 4,181 | 2002[186] |
Xanthomonas oryzae | KACC10331 | Gammaproteobacteria | 4,941,439 | 4,637 | 2005[189] |
Xanthomonas oryzae | MAFF311018 | Gammaproteobacteria | 4,940,217 | 4,372 | Unpublished[1] |
Xylella fastidiosa | 9a5c | Gammaproteobacteria | 2,679,306 | 2,766 | 2000[190] |
Xylella fastidiosa | Temecula1 | Gammaproteobacteria | 2,519,802 | 2,034 | 2003[191] |
Yersinia pestis | Antiqua | Gammaproteobacteria | 4,702,289 | 4,167 | 2006[192] |
Yersinia pestis | CO-92BiovarOrientalis | Gammaproteobacteria | 4,653,728 | 4,008 | 2001[193] |
Yersinia pestis | KIM | Gammaproteobacteria | 4,600,755 | 4,090 | 2002[194] |
Yersinia pestis | Mediaevalis | Gammaproteobacteria | 4,595,065 | 3,895 | 2004[195] |
Yersinia pseudotuberculosis | IP32953 | Gammaproteobacteria | 4,744,671 | 3,974 | 2004[196] |
Zetaproteobacteria
Myxococcota–Campylobacterota
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Anaeromyxobacter dehalogenans | 2CP-C | delta-epsilon | 5,013,479 | 4,346 | Unpublished[1] |
Bdellovibrio bacteriovorus
|
HD100 | delta-epsilon | 3,782,950 | 3,583 | 2004[197] |
Campylobacter jejuni | NCTC11168 | delta-epsilon | 1,641,481 | 1,643 | 2000[198] |
Campylobacter jejuni | RM1221 | delta-epsilon | 1,777,831 | 1,838 | 2005[199] |
Desulfotalea psychrophila | LSv54 | delta-epsilon | 3,523,383 | 3,118 | Unpublished[1] |
Desulfovibrio desulfuricans | G20 | delta-epsilon | 3,730,232 | 3,775 | Unpublished[1] |
Desulfovibrio vulgaris
|
Hildenborough | delta-epsilon | 3,570,858 | 3,379 | 2004[200] |
Geobacter metallireducens | GS15 | delta-epsilon | 3,997,420 | 3,519 | Unpublished[1] |
Geobacter sulfurreducens | PCA | delta-epsilon | 3,814,139 | 3,447 | 2003[201] |
Helicobacter hepaticus | ATCC51449 | delta-epsilon | 1,799,146 | 1,875 | 2003[202] |
Helicobacter pylori | 26695 | delta-epsilon | 1,667,867 | 1,566 | 1997[203] |
Helicobacter pylori | HPAG1 | delta-epsilon | 1,596,366 | 1,536 | Unpublished[1] |
Helicobacter pylori | J99 | delta-epsilon | 1,643,831 | 1,491 | 1999[204] |
Lawsonia intracellularis | PHEMN1-00 | delta-epsilon | 1,719,014 | 1,344 | Unpublished[1] |
Lawsonia intracellularis | PHE/MN1-00 | delta-epsilon | 1,457,619 (chromosome) 27,048 (plasmid A) 39,794 (plasmid B) 194,553 (plasmid C) |
1,187 29 (plasmid A) 24 (plasmid B) 104 (plasmid C) |
2013[205] |
Myxococcus xanthus | DK1622 | delta-epsilon | 9,139,763 | 7,331 | Unpublished[1] |
Pelobacter carbinolicus | DSM2380 | delta-epsilon | 3,665,893 | 3,119 | Unpublished[1] |
Sorangium cellulosum | So ce56 | delta-epsilon | 13,033,779 | 9,367 | 2007[206] |
Sulfurimonas denitrificans | DSM1251 | delta-epsilon | 2,201,561 | 2,104 | 2007[207] |
Syntrophus aciditrophicus | SB | delta-epsilon | 3,179,300 | 3,168 | Unpublished[1] |
Thiomicrospira denitrificans | ATCC33889 | delta-epsilon | 2,201,561 | 2,097 | Unpublished[1] |
Wolinella succino | DSMZ1740 | delta-epsilon | 2,110,355 | 2,044 | 2003[208] |
Spirochaetota
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Borrelia burgdorferi | B31 | Spirochaetota
|
910,724 | 850 | [209] |
Borrelia garinii | PBi | Spirochaetota | 904,246 | 832 | [210] |
Leptospira interrogans | 56601 | Spirochaetota | 4,332,241 | 4,358 | [211] |
Unspecified | Unspecified | Spirochaetota | 358,943 | 367 | [211] |
Leptospira interrogans | FiocruzL1130 | Spirochaetota | 4,277,185 | 3,394 | [212] |
Unspecified | Unspecified | Spirochaetota | 350,181 | 264 | [212] |
Treponema denticola | ATCC35405 | Spirochaetota | 2,843,201 | 2,767 | [213] |
Treponema pallidum | Nichols | Spirochaetota | 1,138,011 | 1,031 | [214] |
Synergistota
Species | Strain | Type | Base Pairs | Genes | Reference | GenBank Identifier |
---|---|---|---|---|---|---|
Thermovirga lienii | Cas60314, DSM 17291 | Synergistia
|
1,967,774 | DOE Joint Genome Institute | CP003096 |
Mycoplasmatota
Thermodesulfobacteriota
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Thermodesulfatator indicus | CIR29812(T) | Thermodesulfobacteriota | 2,322,224 | 2,291 | 2012[227] |
Thermodesulfobacterium geofontis | OPF15(T) | Thermodesulfobacteriota | 1,634,377 | 1,635 | 2013[228] |
Thermotogota
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Fervidobacterium nodosum | Rt17-B1 | Thermotogota
|
1,950,000 | 1,750 | 2009[229] |
Kosmotoga olearia | TBF 19.5.1 | Thermotogota
|
2,302,126 | 2,118 | 2011[230] |
Mesotoga prima | MesG1.Ag.4.2 | Thermotogota
|
2,974,229 chromosome 1,724 plasmid |
2,736 | 2012[231] |
Thermosipho africanus | TCF52B | Thermotogota
|
2,016,657 | 2,000 | 2009[232] |
Thermosipho melanesiensis | BI429 | Thermotogota
|
1,920,000 | 1,879 | 2009[229] |
Thermotoga lettingae | TMO | Thermotogota
|
2,140,000 | 2,040 | 2009[229] |
Thermotoga maritima | MSB8 | Thermotogota
|
1,860,725 | 1,846 | 1999,[233] 2013[234] |
Thermotoga petrophila | RKU-1 | Thermotogota
|
1,820,000 | 1,785 | 2009[229] |
See also
- Genome project
- Human microbiome project
- List of sequenced eukaryotic genomes
- List of sequenced archaeal genomes
- List of sequenced plastomes
References
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- In silico analysis of complete bacterial genomes: PCR, AFLP–PCR and endonuclease restriction
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External links
- BacMap — an up-to-date electronic atlas of annotated bacterial genomes
- SUPERFAMILY comparative genomics database Includes genomes of completely sequenced prokaryotes, and sophisticated datamining plus visualisation tools for analysis