Nitrososphaerota
Nitrososphaerota | |
---|---|
Nitrosopumilus maritimus, partially with virions of Nitrosopumilus spindle-shaped virus 1 (Thaspiviridae ) attached.
| |
Scientific classification | |
Domain: | |
Superphylum: | |
Phylum: | Nitrososphaerota Brochier-Armanet et al. 2021[1]
|
Class: | Nitrososphaeria |
Order | |
| |
Synonyms | |
|
The Nitrososphaerota (syn. Thaumarchaeota) are a
Nitrososphaerota-derived membrane-spanning tetraether lipids (glycerol dialkyl glycerol tetraethers; GDGTs) from marine sediments can be used to reconstruct past temperatures via the TEX86 paleotemperature proxy, as these lipids vary in structure according to temperature.[10] Because most Nitrososphaerota seem to be autotrophs that fix CO2, their GDGTs can act as a record for past Carbon-13 ratios in the dissolved inorganic carbon pool, and thus have the potential to be used for reconstructions of the carbon cycle in the past.[7]
Taxonomy
Phylogeny of Nitrososphaerota[11][12][13] | ||||||||||||||||||
|
Phylogeny of Nitrososphaerota[14][15][16] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[17] and National Center for Biotechnology Information (NCBI)[18]
- Class Nitrososphaeria Stieglmeier et al. 2014[19][Conexivisphaeria Kato et al. 2020]
- ?"Cenoporarchaeum" corrig. Zhang et al. 2019
- ?"Candidatus Giganthauma" Muller et al. 2010[20]
- ?"Candidatus Nitrosodeserticola" Hwang et al. 2021
- Order "Geothermarchaeales" Adam et al. 2022
- Family Geothermarchaeaceae Adam et al. 2022
- ?"Geothermarchaeum" Adam et al. 2022
- ?"Scotarchaeum" Adam et al. 2022
- Family Geothermarchaeaceae Adam et al. 2022
- Order Conexivisphaerales Kato et al. 2020
- Family Conexivisphaeraceae Kato et al. 2020
- Conexivisphaera Kato et al. 2020
- Family Conexivisphaeraceae Kato et al. 2020
- Order "Nitrosocaldales" de la Torre et al. 2008
- Family "Nitrosocaldaceae" Qin et al. 2016
- "Candidatus Nitrosothermus" Luo et al. 2021
- "Candidatus Nitrosocaldus" de la Torre et al. 2008
- Family "Nitrosocaldaceae" Qin et al. 2016
- Order NitrososphaeralesStieglmeier et al. 2014
- Family Methylarchaeaceae Hua et al. 2019
- ?"Candidatus Methylarchaeum" Hua et al. 2019
- ?"Candidatus Methanotowutia" Ou et al. 2022
- Family NitrososphaeraceaeStieglmeier et al. 2014
- "Candidatus Nitrosocosmicus" Lehtovirta-Morley et al. 2016
- Nitrososphaera Stieglmeier et al. 2014[21]
- Family Methylarchaeaceae Hua et al. 2019
- Order Nitrosopumilales Qin et al. 2017[22]
- Family Nitrosopumilaceae Qin et al. 2017
- ?"Candidatus Nitrosospongia" Moeller et al. 2019
- "Candidatus Nitrosotalea" Lehtovirta 2011[23]
- "Candidatus Nitrosotenuis" Li et al. 2016[24][25]
- "Candidatus Nitrosopelagicus" Santoro et al. 2015[26]
- "Cenarchaeum" DeLong & Preston 1996
- Nitrosarchaeum corrig. Jung et al. 2018[27][28]
- Nitrosopumilus Qin et al. 2017[29][30][31]
- Family Nitrosopumilaceae Qin et al. 2017
Metabolism
Nitrososphaerota are important ammonia oxidizers in aquatic and terrestrial environments, and are the first archaea identified as being involved in nitrification.[32] They are capable of oxidizing ammonia at much lower substrate concentrations than ammonia-oxidizing bacteria, and so probably dominate in oligotrophic conditions.[8][33] Their ammonia oxidation pathway requires less oxygen than that of ammonia-oxidizing bacteria, so they do better in environments with low oxygen concentrations like sediments and hot springs. Ammonia-oxidizing Nitrososphaerota can be identified metagenomically by the presence of archaeal ammonia monooxygenase (amoA) genes, which indicate that they are overall more dominant than ammonia oxidizing bacteria.[8] In addition to ammonia, at least one Nitrososphaerota strain has been shown to be able to use urea as a substrate for nitrification. This would allow for competition with phytoplankton that also grow on urea.[34] One study of microbes from wastewater treatment plants found that not all Nitrososphaerota that express amoA genes are active ammonia oxidizers. These Nitrososphaerota may be capable of oxidizing methane instead of ammonia, or they may be heterotrophic, indicating a potential for a diversity of metabolic lifestyles within the phylum.[35] Marine Nitrososphaerota have also been shown to produce nitrous oxide, which as a greenhouse gas has implications for climate change. Isotopic analysis indicates that most nitrous oxide flux to the atmosphere from the ocean, which provides around 30% of the natural flux, may be due to the metabolic activities of archaea.[36]
Many members of the phylum assimilate carbon by
A study has revealed that Nitrososphaerota are most likely the dominant producers of the critical vitamin B12. This finding has important implications for eukaryotic phytoplankton, many of which are auxotrophic and must acquire vitamin B12 from the environment; thus the Nitrososphaerota could play a role in algal blooms and by extension global levels of atmospheric carbon dioxide. Because of the importance of vitamin B12 in biological processes such as the citric acid cycle and DNA synthesis, production of it by the Nitrososphaerota may be important for a large number of aquatic organisms.[37]
Environment
Many Nitrososphaerota, such as Nitrosopumilus maritimus, are marine and live in the open ocean.
See also
References
- PMID 34694987.
- ^ S2CID 8030169.
- PMID 21525411.
- PMID 1608980.
- PMID 19105819.
- PMID 20598889.
- ^ .
- ^ PMID 21546306.
- ^ PMID 20421470.
- S2CID 54198843.
- ^ "The LTP". Retrieved 10 May 2023.
- ^ "LTP_all tree in newick format". Retrieved 10 May 2023.
- ^ "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ J.P. Euzéby. "Thaumarchaeota". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-03-20.
- ^ Sayers, et al. "Thaumarchaeota". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
- PMID 24907263.
- PMID 21966926.
- PMID 24999826.
- S2CID 4340386.
- PMID 21896746.
- PMID 24278328.
- PMID 27030530.
- PMID 25587132.
- PMID 21364937.
- PMID 21914867.
- PMID 23209206.
- PMID 22461555.
- PMID 26528837.
- ^ PMID 22071344.
- ^ PMID 24843170.
- ^ PMID 25114236.
- PMID 21930919.
- S2CID 36668258.
- PMID 25126756.
- PMID 21966926.
Further reading
- Breuker A, Schippers A, Nishizawa M, Takaki Y, Sunamura M, Urabe T, Nunoura T, Takai K (October 2014). "Microbial community stratification controlled by the subseafloor fluid flow and geothermal gradient at the Iheya North hydrothermal field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331)". Applied and Environmental Microbiology. 80 (19): 6126–35. PMID 25063666.
- Wu Y, Conrad R (July 2014). "Ammonia oxidation-dependent growth of group I.1b Thaumarchaeota in acidic red soil microcosms". FEMS Microbiology Ecology. 89 (1): 127–34. PMID 24724989.
- Deschamps P, Zivanovic Y, Moreira D, Rodriguez-Valera F, López-García P (June 2014). "Pangenome evidence for extensive interdomain horizontal transfer affecting lineage core and shell genes in uncultured planktonic thaumarchaeota and euryarchaeota". Genome Biology and Evolution. 6 (7): 1549–63. PMID 24923324.