Retron

Source: Wikipedia, the free encyclopedia.
Retron msr RNA
sequence conservation of msr
Identifiers
Symbolmsr
RfamRF00170
Other data
RNA typeGene
Domain(s)Bacteria
SOSO:0000233
PDB structuresPDBe

A retron is a distinct

5′
end of the DNA chain via a 2′–5′ phosphodiester linkage that occurs from the 2′ position of the conserved internal guanosine residue.

Sequence and structure

The retron operon carries a promoter sequence P that controls the synthesis of an RNA transcript carrying three loci: msr, msd, and ret. The ret gene product, a reverse transcriptase, processes the msd/msr portion of the RNA transcript into msDNA.

Retron elements are about 2 kb long. They contain a single operon controlling the synthesis of an RNA transcript carrying three loci, msr, msd, and ret, that are involved in msDNA synthesis. The DNA portion of msDNA is encoded by the msd gene, the RNA portion is encoded by the msr gene, while the product of the ret gene is a reverse transcriptase similar to the RTs produced by retroviruses and other types of retroelements.[1] Like other reverse transcriptases, the retron RT contains seven regions of conserved amino acids (labeled 1–7 in the figure), including a highly conserved tyr-ala-asp-asp (YADD) sequence associated with the catalytic core. The ret gene product is responsible for processing the msd/msr portion of the RNA transcript into msDNA.

Classification and occurrence

For many years after their discovery in animal viruses, reverse transcriptases were believed to be absent from

retroelements
, have been found in a wide variety of different bacteria:

  • Retrons were the first family of retroelement discovered in bacteria; the other two families of known bacterial retroelements are:
  • ribonucleoprotein comprising an intron lariat bound to two intron-coded proteins.[2]
  • diversity-generating retroelements (DGRs).[3] The DGRs are not mobile, but function to diversify DNA sequences.[2] For example, DGRs mediate the switch between pathogenic and free-living phases of Bordetella.[4]

Function

Since retrons are not mobile, their appearance in diverse bacterial species is not a "

selfish DNA" phenomenon. Rather, bacterial retrons confer some protection from phage infection to bacterial hosts. Several retrons are located in DNA regions next to certain protein effector-coding genes. When their expression is activated, most of these effectors and their associated retrons function together to block phage infection.[5][6]

Retrons are being developed into genome-editing tools.[7]

References

  1. S2CID 24854188
    .
  2. ^ a b Medhekar B, Mille JF (2007). "Diversity-Generating Retroelements". Current Opinion in Microbiology. 10 (4): 388–395.
    PMID 17703991
    .
  3. ^ Simon DM, Zimmerly S (2008). "A diversity of uncharacterized reverse transcriptases in bacteria". Nucleic Acids Res. 36 (22): 7219–7229.
    PMID 19004871
    .
  4. ^ Liu M, Gingery M, Doulatov SR, Liu Y, Hodes A, Baker S, Davis P, Simmonds M, Churcher C, Mungall K, Quail MA, Preston A, Harvill ET, Maskell DJ, Eiserling FA, Parkhill J, Miller JF (2004). "Genomic and Genetic Analysis of Bordetella Bacteriophages Encoding Reverse Transcriptase-Mediated Tropism-Switching Cassettes". J. Bacteriol. 186 (5): 1503–1517.
    PMID 14973019
    .
  5. .
  6. .
  7. .

External links

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