SOX gene family

Source: Wikipedia, the free encyclopedia.
SOXB subfamily, C-terminal next to HMG box
Identifiers
SymbolSOXp
PfamPF12336
InterProIPR022097
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
SOXE, N-terminal
Identifiers
SymbolSox_N
PfamPF12444
InterProIPR022151
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
SOXF, C-terminal, 9aaTAD
Identifiers
SymbolSOX_C
InterProIPR021934
PROSITEPS51516
SOXF, central
Identifiers
SymbolSox17_18_mid
PfamPF12067
InterProIPR033392
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary

SOX genes (

amino acids
being conserved between species.

Sox genes are defined as containing the HMG box of a gene involved in sex determination called

Y-chromosome. There are 20 SOX genes present in humans and mice, and 8 present in Drosophila. Almost all Sox genes show at least 50% amino acid similarity with the HMG box in Sry. The family is divided into subgroups according to homology within the HMG domain and other structural motifs, as well as according to functional assays.[1]

The developmentally important Sox family has no singular function, and many members possess the ability to regulate several different aspects of development. While many Sox genes are involved in sex determination, some are also important in processes such as

brain tumours
due to this sequential expression in the cerebellum, making them a target for significant research.

Sox proteins bind to the sequence WWCAAW and similar sequences (

W=A or T). They have weak binding specificity and unusually low affinity for DNA. Sox genes are related to the Tcf/Lef1 group of genes which also contain a sequence-specific high mobility group and have a similar sequence specificity (roughly TWWCAAAG).[4]

Groups

Sox genes are classified into groups. Sox genes from different groups share little similarity outside the DNA-binding domain. In mouse and human the members of the groups are:[5]

See also

References

External links