Synergistota
Synergistota | |
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Scientific classification | |
Domain: | Bacteria Jumas-Bilak et al. 2021[1] |
Phylum: | Synergistota Jumas-Bilak et al. 2009 |
Class: | Synergistia Jumas-Bilak et al. 2009 |
Order: | Synergistales Jumas-Bilak et al. 2009 |
Families | |
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Synonyms | |
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The Synergistota is a phylum of
Comparative genomics and molecular signatures
Recent comparative analyses of sequenced Synergistota genomes have led to identification of large numbers of
Phylogeny
16S rRNA based | 120 single copy marker proteins based GTDB 08-RS214[15][16][17] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Taxonomy
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN)[18] and the National Center for Biotechnology Information (NCBI).[19]
- Phylum Synergistota Jumas-Bilak et al. 2021
- Class SynergistiaJumas-Bilak et al. 2009
- Order SynergistalesJumas-Bilak et al. 2009
- Genus "Pacaella" Ndongo et al. 2017
- Species ?"P. massiliensis" Ndongo et al. 2017
- Genus "Candidatus Tammella" Hongoh et al. 2007
- Species ?"Ca. T. caduceiae" Hongoh et al. 2007
- Family Aminithiophilaceae Pradel et al. 2023
- Genus Aminithiophilus Pradel et al. 2023
- Family Acetomicrobiaceae Pradel et al. 2023
- Genus Acetomicrobium Soutschek et al. 1985 [Anaerobaculum Rees et al. 1997]
- Family Aminiphilaceae Pradel et al. 2023
- Genus "Aminirod" Liu et al. 2021
- Species ?"A. propionatiphilus" Liu et al. 2021
- Genus Aminiphilus Díaz et al. 2007
- Genus "Aminirod" Liu et al. 2021
- Family Aminobacteriaceae Pradel et al. 2023
- Genus Aminobacterium Baena et al. 1999
- Genus Aminivibrio Honda et al. 2013
- Genus Fretibacterium Vartoukian et al. 2013
- Genus Lactivibrio Qiu et al. 2014
- Family Dethiosulfovibrionaceae Pradel et al. 2023
- Genus Dethiosulfovibrio Magot et al. 1997
- Genus Jonquetella Jumas-Bilak et al. 2007
- Genus Pyramidobacter Downes et al. 2009
- Genus Rarimicrobium Jumas-Bilak et al. 2015
- Family SynergistaceaeJumas-Bilak et al. 2009 [Clostridiales Family XV; Thermosynergistaceae Yang et al. 2021]
- Genus Aminomonas Baena et al. 1999
- Genus "Candidatus Caccocola" Gilroy et al. 2021
- Genus Cloacibacillus Ganesan et al. 2008 emend. Looft et al. 2013
- Genus "Candidatus Equadaptatus" Gilroy et al. 2022
- Species ?"Ca. E. faecalis" Gilroy et al. 2022
- Genus SynergistesAllison et al. 1993
- Genus Thermanaerovibrio Baena et al. 1999 emend. Palaniappan et al. 2013
- Family Thermosynergistaceae Yang et al. 2021
- Genus Thermosynergistes Yang et al. 2021
- Family Thermovirgaceae Pradel et al. 2023
- Genus Thermovirga Dahle and Birkeland 2006
- Genus "Pacaella" Ndongo et al. 2017
- Order
- Class
See also
References
- PMID 34694987.
- ^ Hugenholtz, P., Hooper, S.D., and Kyrpides, N.C. (2009). Focus: Synergistetes. Environ. Microbiol. 11, 1327–1329.
- ^ .
- ^ a b Gupta, R. S. (2011) Origin of Diderm (Gram-negative) Bacteria: Antibiotic Selection Pressure Rather than Endosymbiosis Likely led to the Evolution of Bacterial Cells with Two Membranes. Antonie van Leeuwenhoek. 100: 171–182
- ^ PMID 20637628.
- PMID 18048718.
- ^ a b c Vartoukian, S.R., Palmer, R.M., and Wade, W.G. (2007). The division "Synergistes". Anaerobe. 13, 99–106.
- ^ Marchandin, H., Damay, A., Roudiere, L., Teyssier, C., Zorgniotti, I., Dechaud, H., Jean-Pierre, H., and Jumas-Bilak, E. (2010). Phylogeny, diversity and host specialization in the phylum Synergistetes with emphasis on strains and clones of human origin. Res. Microbiol. 161, 91–100.
- PMID 16891512.
- ^ Riviere, D., Desvignes, V., Pelletier, E., Chaussonnerie, S., Guermazi, S., Weissenbach, J., Li, T., Camacho, P., and Sghir, A. (2009). Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. ISME. J. 3, 700–714.
- ^ PMID 22711299.
- ^ "The LTP". Retrieved 20 November 2023.
- ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
- ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ J.P. Euzéby. "Synergistetes". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2016-03-20.
- ^ Sayers; et al. "Synergistetes". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.