Tractography

Tractography
Tractography of human brain
Purpose	used to visually represent nerve tracts

In neuroscience, tractography is a 3D modeling technique used to visually represent nerve tracts using data collected by diffusion MRI.^[1] It uses special techniques of magnetic resonance imaging (MRI) and computer-based diffusion MRI. The results are presented in two- and three-dimensional images called tractograms.^[2]

In addition to the long tracts that connect the

atlases and the poor understanding of their functions.

The most advanced tractography algorithm can produce 90% of the ground truth bundles, but it still contains a substantial amount of invalid results.[3]

MRI technique

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Tractography is performed using data from

. Bundles of axons provide a barrier to perpendicular diffusion and a path for parallel diffusion along the orientation of the fibers.

Anisotropic diffusion is expected to be increased in areas of high mature axonal order. Conditions where the

reduce anisotropy, as the barriers are affected by destruction or disorganization.

Anisotropy is measured in several ways. One way is by a ratio called fractional anisotropy (FA). An FA of 0 corresponds to a perfect sphere, whereas 1 is an ideal linear diffusion. Few regions have FA larger than 0.90. The number gives information about how aspherical the diffusion is but says nothing of the direction.

Each anisotropy is linked to an orientation of the predominant axis (predominant direction of the diffusion). Post-processing programs are able to extract this directional information.

This additional information is difficult to represent on 2D grey-scaled images. To overcome this problem, a color code is introduced. Basic colors can tell the observer how the fibers are oriented in a 3D coordinate system, this is termed an "anisotropic map". The software could encode the colors in this way:

• Red indicates directions in the X axis: right to left or left to right.
• Green indicates directions in the Y axis:
  anterior
  to posterior.
• Blue indicates directions in the Z axis: foot-to-head direction or vice versa.

The technique is unable to discriminate the "positive" or "negative" direction in the same axis.

Mathematics

Using

Suppose there is a fiber tract of interest in the sample. Following the Frenet–Serret formulas, we can formulate the space-path of the fiber tract as a parameterized curve:

${\displaystyle {\frac {d\mathbf {r} (s)}{ds}}=\mathbf {T} (s),}$

where ${\displaystyle \mathbf {T} (s)}$ is the tangent vector of the curve. The reconstructed diffusion tensor ${\displaystyle D}$ can be treated as a matrix, and we can compute its

${\displaystyle \lambda _{1},\lambda _{2},\lambda _{3}}$ and ${\displaystyle \mathbf {u} _{1},\mathbf {u} _{2},\mathbf {u} _{3}}$. By equating the eigenvector corresponding to the largest eigenvalue with the direction of the curve:

${\displaystyle {\frac {d\mathbf {r} (s)}{ds}}=\mathbf {u} _{1}(\mathbf {r} (s))}$

we can solve for ${\displaystyle \mathbf {r} (s)}$ given the data for ${\displaystyle \mathbf {u} _{1}(s)}$. This can be done using numerical integration, e.g., using

.

See also

• Connectome
• Diffusion MRI
• Connectogram

References