User talk:Vramasub

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I agree that the organization of the Zinc Finger wikipedia article had some issues, but I do not agree that simply moving most of the "Engineered Zinc Finger Arrays" section to the Zinc Finger Chimeras article improved things. It is generally a good idea to discuss such a drastic change on the relevant talk page prior to actually executing the change since many people have likely put in a substantial amount of time writing the existing article. You removed almost 90% of the references and about half of the text. In addition, the "Zinc finger chimera" article is not really the appropriate place to move all information regarding engineered zinc finger constructs. This section included information about altering the DNA binding specificity of zinc finger arrays whether or not they were fused to a second protein domain to create a zinc finger chimera.

If you really feel that the extra information on engineered zinc finger constructs and applications of such constructs makes the zinc finger article difficult to navigate for the average reader, then I would suggest replacing the references you removed that deal with the biochemistry of naturally occurring zinc finger arrays, writing a better summary of the zinc finger engineering field and its applications, and then creating a new article dedicated to engineering zinc finger arrays to alter their specificity that includes all relevant detailed information and references from both the previous zinc finger article and the zinc finger chimera article. Of course, this will involve more work than simply cutting and pasting text or the end result will be unorganized and difficult to read. I'm happy to discuss further on the relevant talk pages. ScienceGeekling (talk) 02:43, 13 June 2012 (UTC)[reply]

I'd certainly be happy to talk, after I posted the suggestion to merge I barely saw any discussion on the topic so I figured that nobody was really paying attention. I certainly plan to do more with the page in the next couple of weeks, I simply didn't have the time to at the moment. I think that the zinc finger page itself should only be talking about what the zinc finger structure itself. Like you said, adding more information about the biochemistry would be good. I disagree that the engineered arrays should have their own page, however, since by themselves they don't serve any function. The reason such engineered arrays are useful is because they can be combined with other functional domains, so I would think it makes more sense to make that a subsection in the zinc finger chimera page. It certainly needs to be rewritten, though, and my wholesale copy-paste was more of a stopgap than anything else. What are your thoughts? Vramasub (talk) 03:57, 13 June 2012 (UTC)[reply]

zinc fingers as a class of proteins were studied long before the structure was known so limiting the zinc finger article to only information related to the structure as you propose doesn't make sense. The fact that you can alter the specificity of this class of proteins is incredibly relevant to numerous areas of scientific research and biotechnology. Much of the early work with engineered zinc fingers just studied their binding and specificity rather than using them as chimeras with fused functional domains. And many zinc finger chimeras use the non-engineered DNA binding domain of Zif268/Egr1 so zinc finger chimera and engineered zinc finger arrays are not equivalent.ScienceGeekling (talk) 17:09, 13 June 2012 (UTC)[reply]

I'm glad that you have the time to improve the article and you have already made some good edits to the introduction. But another reason I objected to moving the majority of the references to the

zinc finger chimeras article is that I've never actually heard anyone use the term "zinc finger chimera". The page view statistics for this article are correspondingly low. But you don't have to take my word for it- google the phrases "zinc finger" and "zinc finger chimera" and compare the number of hits. Additional support for including information on engineered zinc fingers and their application in the main article can be found in the fact that hits for the phrase "zinc finger nuclease" (these generally use engineered zinc fingers) are almost half as numerous as hits for the far more general phrase "zinc finger". So visitors to wikipedia are quite likely to be searching for information about engineered zinc finger nucleases when they find their way to this article. If you feel the current article is unbalanced then I'd suggest balancing it out by adding more information rather than removing relevant information.ScienceGeekling (talk) 15:08, 14 June 2012 (UTC)[reply

]

Experiments that alter the specificity of zinc fingers also provide information on the behavior of natural zinc finger proteins with unknown specificities and allow us to better understand protein-DNA interactions in general. One purpose of such research is to target desired DNA sequences- but this is not the only purpose. But I agree with most of your other points. How about changing the "Engineered zinc finger proteins" section to "Applications", write a brief intro explaining that zinc fingers can be re-targeted, have a short paragraph on each major application (with links to the relevant full articles), and end with a streamlined version of the methods to do the engineering? This way no one has to wade through detail they might not be interested in to get to what they find interesting, but the detail is still there if they do happen to be interested. ScienceGeekling (talk) 15:10, 15 June 2012 (UTC)[reply]

That sounds good to me, that was pretty close to how I did it initially, which you objected to because of the wholesale moving of a lot of the information. Where do you think these details should go? In other words, what other full articles should we have on the subject? I think the

zinc finger chimeras

might be better moved into a streamlined section in the main zinc finger article. In that case, what other full articles need to be added?

Hopefully we don't need any new articles. If we turn the engineered zinc finger section into an applications section that starts with an intro and covers zinc finger nucleases and zinc finger transcription factors and then move the engineering details to the end of the section, I'm sure I can shrink the zinc finger engineering methods down to a single paragraph and still retain the most critical references. I'll give this a shot sometime this weekend. If you beat me to it, please move the details to the end of the article and I'll streamline and update the details when I get a chance. At this point we probably need to try some edits and see how it goes. ScienceGeekling (talk) 06:12, 22 June 2012 (UTC)[reply]

I just updated the applications section as we discussed. It would probably make sense to move further discussion to the talk page for this article. ScienceGeekling (talk) 15:26, 25 June 2012 (UTC)[reply]

Dear Vramasub,

I thought that you would be interested to know that the International Society for Computational Biology was running its Wikipedia competition again this year. You can find out more at the URL below:

http://en.wikipedia.org/wiki/Wikipedia:WikiProject_Computational_Biology/ISCB_competition_announcement_2013

To enter you must be a student or post-doctoral trainee. I would also be grateful if you could also let your colleagues know about the competition as we would like to get even more great entries this year :-)

Best wishes. Alexbateman (talk) 14:45, 22 August 2013 (UTC)[reply]

Hi,
You appear to be eligible to vote in the current

Hello, Vramasub. Voting in the

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ISCB Wikipedia Competition 2017-18: entries open! The International Society for Computational Biology (ISCB) and WikiProject Computational Biology are pleased to call for participants in the 2017-18 ISCB Wikipedia Competition. The ISCB aims to improve the communication of scientific knowledge to the public at large, and Wikipedia and its sister sites play an increasingly important role in this communication; the ISCB Wikipedia Competition aims to improve the quality of Wikipedia articles relating to computational biology. Entries to the competition are open now! Articles may be claimed until 1 Dec 2017 and the competition closes on 31 Dec 2017. For students/trainees: Entry to the competition is open internationally to students and trainees of any level, both as individuals and as groups. Prizes of up to $500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the Intelligent Systems for Molecular Biology conference in Chicago in July 2018. As in previous years, the ISCB encourages competition entries for contributions to Wikipedia in any language, and contributions to Wikidata items. For teachers/trainers: We encourage you to pass this invitation on to your students, or even consider using the competition as part of an in-class assignment. Further details may be found at: Wikipedia:WikiProject Computational Biology/ISCB competition announcement 2017-18. If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from the mailing list or alternatively to opt-out of all massmessage mailings, you may add Category:Opted-out of message delivery to your user talk page. (Message delivered:MediaWiki message delivery (talk) 18:30, 5 October 2017 (UTC))[reply ]

Hello, Vramasub. Voting in the

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If you wish to participate in the 2017 election, please review the candidates and submit your choices on the voting page. MediaWiki message delivery (talk) 18:42, 3 December 2017 (UTC)[reply]

ISCB Wikipedia Competition 2018: entries open! The International Society for Computational Biology (ISCB) and WikiProject Computational Biology are pleased to call for participants in the 2018 ISCB Wikipedia Competition. The ISCB aims to improve the communication of scientific knowledge to the public at large, and Wikipedia and its sister sites play an increasingly important role in this communication; the ISCB Wikipedia Competition aims to improve the quality of Wikipedia articles relating to computational biology. Entries to the competition are open now; the competition closes on 31 Dec 2018. For students/trainees: Entry to the competition is open internationally to students and trainees of any level, both as individuals and as groups. Prizes of up to $500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the ISMB/ECCB conference in Basel, Switzerland in July 2019. As in previous years, the ISCB encourages competition entries for contributions to Wikipedia in any language, and contributions to Wikidata items. For teachers/trainers: We encourage you to pass this invitation on to your students, and consider using the competition as part of an in-class assignment. Further details may be found at: Wikipedia:WikiProject Computational Biology/ISCB competition announcement 2018. If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from the mailing list or alternatively to opt-out of all massmessage mailings, you may add Category:Opted-out of message delivery to your user talk page. (Message delivered:MediaWiki message delivery (talk) 12:02, 1 February 2018 (UTC))[reply ]

8th ISCB Wikipedia Competition: entries open! The WikiProject Computational Biology are pleased to call for participants in the 8th ISCB Wikipedia Competition. The ISCB aims to improve the communication of scientific knowledge to the public at large, and Wikipedia plays an increasingly important role in this communication; the ISCB Wikipedia Competition aims to improve the quality of Wikipedia articles relating to computational biology. Entries to the competition are open now; the competition closes on 17 May 2019. For students/trainees: Entry to the competition is open internationally to students and trainees of any level, both as individuals and as groups. Prizes of up to $500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the ISMB/ECCB conference in Basel, Switzerland in July 2019. As in previous years, the ISCB encourages competition entries for contributions to Wikipedia in any language. For teachers/trainers: We encourage you to pass this invitation on to your students, and consider using the competition as part of an in-class assignment. Further details may be found at: Wikipedia:WikiProject Computational Biology/8th ISCB Wikipedia competition announcement. If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from the mailing list or alternatively to opt-out of all massmessage mailings, you may add Category:Opted-out of message delivery to your user talk page. (Message delivered:MediaWiki message delivery (talk) 17:12, 18 August 2018 (UTC))[reply ]

8th ISCB Wikipedia Competition: a reminder Hello, this is a reminder that the WikiProject Computational Biology are currently calling for participants in the 8th ISCB Wikipedia Competition. The ISCB aims to improve the communication of scientific knowledge to the public at large, and Wikipedia plays an increasingly important role in this communication; the ISCB Wikipedia Competition aims to improve the quality of Wikipedia articles relating to computational biology. Entries to the competition are open now; the competition closes on 17 May 2019. For students/trainees: Entry to the competition is open internationally to students and trainees of any level, both as individuals and as groups. Prizes of up to $500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the ISMB/ECCB conference in Basel, Switzerland in July 2019. As in previous years, the ISCB encourages competition entries for contributions to Wikipedia in any language. For teachers/trainers: Please pass this invitation on to your students! We also encourage you to consider using the competition as part of an in-class assignment. Further details may be found at: Wikipedia:WikiProject Computational Biology/8th ISCB Wikipedia competition announcement. If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from the mailing list or alternatively to opt-out of all massmessage mailings, you may add Category:Opted-out of message delivery to your user talk page. Amkilpatrick (talk) 10:38, 13 February 2019 (UTC)[reply]

8th ISCB Wikipedia Competition: entries closing soon! Hello, this is to let you know that entries for the 8th ISCB Wikipedia Competition are closing soon! The ISCB aims to improve the communication of scientific knowledge to the public at large, and Wikipedia plays an increasingly important role in this communication; the ISCB Wikipedia Competition aims to improve the quality of Wikipedia articles relating to computational biology. Entries to the competition are open now; the competition closes on 17 May 2019. For students/trainees: Entry to the competition is open internationally to students and trainees of any level, both as individuals and as groups. Prizes of up to $500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the ISMB/ECCB conference in Basel, Switzerland in July 2019. As in previous years, the ISCB encourages competition entries for contributions to Wikipedia in any language. For teachers/trainers: Please pass this invitation on to your students! We also encourage you to consider using the competition as part of an in-class assignment. Further details may be found at: Wikipedia:WikiProject Computational Biology/8th ISCB Wikipedia competition announcement. If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from the mailing list or alternatively to opt-out of all massmessage mailings, you may add Category:Wikipedians who opt out of message delivery to your user talk page. Amkilpatrick (talk) 14:37, 9 April 2019 (UTC)[reply]

8th ISCB Wikipedia Competition: deadline extended! Hello, this is to let you know that the editing deadline for the 8th ISCB Wikipedia Competition has been extended to 28 June 2019. We encourage you to participate and make the most of this extended editing period! Remember, prizes of up to $500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the ISMB/ECCB conference in Basel, Switzerland in July 2019. For teachers/trainers: Please pass this invitation on to your students! We also encourage you to consider using the competition as part of an in-class assignment. Further details may be found at: Wikipedia:WikiProject Computational Biology/8th ISCB Wikipedia competition announcement. If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from the mailing list or alternatively to opt-out of all massmessage mailings, you may add Category:Wikipedians who opt out of message delivery to your user talk page. Amkilpatrick (talk) 07:32, 3 May 2019 (UTC)[reply]