List of long non-coding RNA databases

Edit links
Source: Wikipedia, the free encyclopedia.

This is a list of

lncRNAs.[1][2]

Long non-coding RNA databases

Name Description References
deepBase Identification, expression, evolution and function of long non-coding RNAs (LncRNAs), small RNAs and circular RNAs from deep-sequencing data [3]
LNCipedia A comprehensive compendium of human long non-coding RNAs. [4][5]
lncRNAdb The Reference Database For Functional Long Noncoding RNAs. [6]
LncRNAWiki A wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs (lncRNAs) [7]
LncBook A comprehensive collection of 270,044 human lncRNAs and systematic curation of lncRNAs’ annotation by multi-omics data integration, function annotation and disease association [8]
MONOCLdb The MOuse NOnCode Lung database provides the annotations and expression profiles of mouse long non-coding RNAs (lncRNAs) involved in
SARS-CoV
infections.		 [9]
NONCODE An integrated knowledge database dedicated to ncRNAs, especially lncRNAs [10]
lncRNome A comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans.
NRED A database of long noncoding RNA expression. [11]
C-It-Loci A tool to explore and to compare the expression profiles of conserved loci among various tissues in three organisms

[12]

MiTranscriptome A catalog of human long poly-adenylated RNA transcripts derived from computational analysis of high-throughput RNA-Seq data from over 6,500 samples, spanning diverse cancer and tissue types [13]
slncky Evolution Browser This site contains alignments and evolutionary metrics of conserved lncRNAs. [14]
Cancer LncRNA Census (CLC) Database of long-noncoding RNAs causally implicated in cancer through in vivo, in vitro and other evidence. [15]
BIGTranscriptome High-confidence of coding and noncoding transcriptomes assembled with hundreds of pseudo-stranded and stranded RNA-seq datasets. [16]
lncRNAKB A knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA [17]

References

  1. PMID 22663078
    .
  2. PMID 22546862
    .
  3. PMID 26590255
    .
  4. PMID 23042674
    .
  5. PMID 25378313
    .
  6. PMID 21112873
    .
  7. PMID 25399417
    .
  8. PMID 30329098
    .
  9. PMID 24922324.{{cite journal}}: CS1 maint: multiple names: authors list (link
    )
  10. PMID 22135294
    .
  11. PMID 18829717
    .
  12. PMID 26163692
    .
  13. PMID 25599403
    .
  14. PMID 26838501
    .
  15. PMID 32024996
    .
  16. PMID 28396519
    .
  17. PMID 33020484
    .
Retrieved from "https://en.wikipedia.org/w/index.php?title=List_of_long_non-coding_RNA_databases&oldid=1209109825"