FAM129C
Niban-like protein 2.[1](NLP2) is a protein that in humans is encoded by the FAM129C[1] gene. Paralogs of this gene include FAM129A, and FAM129B.[2] Its aliases include B-Cell Novel Protein 1 (BCNP1), and Family with Sequence Similarity 129 Member C (FAM129C).[3][4]
Gene
The FAM129C gene is 30,538
Gene conservation
True orthologs of FAM129C seem to be highly conserved in mammals, reptiles, marsupials, bony and cartilaginous fish. The most distant ortholog of FAM129C were found to be in a cellular slime mould, Polysphondyllum pallidum, and even a species of barley, Hordeum vulgare.
Species | Common Name | NCBI Accession # | Sequence Length | E value |
---|---|---|---|---|
Homo sapiens
|
Human | AAI67806 | 697 | ––––––– |
Polysphondyllum pallidum | Cellular slime mould | ADBJ01000008.1 | 532 | 1.00E-05 |
Hordeum vulgare | Barley | AK366539.1 | 553 | 2.00E-04 |
Gene Expression
In normal tissues, the highest expression was in
In the human GEO profile, FAM129C appears to be expressed at lower levels in tissues with dilated cardiomyopathy by almost 50% when compared to non-failing septum tissue.[10] This may mean that FAM129C plays a role in non-failing heart tissue. Another condition in which FAM129C is significantly down-regulated is with the wild-type genotype hippocampal tissue of Rubinstein-Taybi compared with the p300 +/- genotype.[11] People with this condition have an increased risk of developing noncancerous and cancerous tumors such as leukemia and lymphoma
Protein
The
Structure
The predicted tertiary structure for NLP2 shows the FAM129C PH domain. There are seven predicted β sheets at the N terminus.[8][13] This will form the tertiary structure of the pleckstrin homology domain.[8]
Protein Post-Modification
Transmembrane domains, peptide cleavage sites, or strong glycosylation sites were not predicted for NLP2.[14][15][16][17][18][19] A total of 32 likely phosphorylation sites were predicted on Serine (25,) Threonine (5), and Tyrosine (2).[20]
References
- ^ a b "FAM129C Symbol Report - HUGO Gene Nomenclature Committee".
- ^ a b c "NIBAN3 Gene - GeneCards | NIBA3 Protein | NIBA3 Antibody".
- ^ "NCBI - WWW Error Blocked Diagnostic". www.ncbi.nlm.nih.gov. Retrieved 2015-05-08.
- ^ "FAM129C - Niban-like protein 2 - Homo sapiens (Human)". www.uniprot.org. Retrieved 2015-05-08.
- ^ PMID 15057824.
- ^ "OMIM Entry - * 609967 - B-CELL NOVEL PROTEIN 1". omim.org. Retrieved 2015-05-08.[permanent dead link]
- ^ "NCBI - WWW Error Blocked Diagnostic". www.ncbi.nlm.nih.gov. Retrieved 2015-05-09.
- ^ a b c d "Leicester Research Archive: Preliminary Characterisation of FAM129C, a Novel Protein Identified from Proteomic Screening of CLL Samples". lra.le.ac.uk. Retrieved 2015-05-08.
- PMID 12886250.
- ^ "NCBI - WWW Error Blocked Diagnostic". www.ncbi.nlm.nih.gov. Retrieved 2015-05-09.
- ^ "NCBI - WWW Error Blocked Diagnostic". www.ncbi.nlm.nih.gov. Retrieved 2015-05-09.
- ^ a b "SDSC Biology Workbench". seqtool.sdsc.edu. Archived from the original on 2003-08-11. Retrieved 2015-05-09.
- ^ Kelley, Lawrence. "PHYRE2 Protein Fold Recognition Server". www.sbg.bio.ic.ac.uk. Retrieved 2015-05-09.
- ^ "TMHMM Server, v. 2.0". www.cbs.dtu.dk. Retrieved 2015-05-09.
- ^ "SignalP 4.1 Server". www.cbs.dtu.dk. Retrieved 2015-05-09.
- ^ "TargetP 1.1 Server". www.cbs.dtu.dk. Retrieved 2015-05-09.
- ^ "ProP 1.0 Server". www.cbs.dtu.dk. Retrieved 2015-05-09.
- ^ "NetNGlyc 1.0 Server". www.cbs.dtu.dk. Retrieved 2015-05-09.
- ^ "DISULFIND - Cysteines Disulfide Bonding State and Connectivity Predictor". disulfind.dsi.unifi.it. Archived from the original on 2015-04-27. Retrieved 2015-05-09.
- ^ "NetPhos 2.0 Server - prediction results". www.cbs.dtu.dk. Retrieved 2015-05-09.