Fluorescence microscope
A fluorescence microscope is an
Principle
The specimen is illuminated with light of a specific
Most fluorescence microscopes in use are epifluorescence microscopes, where excitation of the fluorophore and detection of the fluorescence are done through the same light path (i.e. through the objective). These microscopes are widely used in biology and are the basis for more advanced microscope designs, such as the confocal microscope and the total internal reflection fluorescence microscope (TIRF).
Epifluorescence microscopy
The majority of fluorescence microscopes, especially those used in the
Light sources
Fluorescence microscopy requires intense, near-monochromatic, illumination which some widespread light sources, like
Sample preparation
In order for a sample to be suitable for fluorescence microscopy it must be fluorescent. There are several methods of creating a fluorescent sample; the main techniques are labelling with fluorescent stains or, in the case of biological samples,
Biological fluorescent stains
Many fluorescent stains have been designed for a range of biological molecules. Some of these are small molecules which are intrinsically fluorescent and bind a biological molecule of interest. Major examples of these are
There are many fluorescent molecules called
Immunofluorescence
Immunofluorescence is a technique which uses the highly specific binding of an
Fluorescent proteins
The modern understanding of genetics and the techniques available for modifying DNA allow scientists to genetically modify proteins to also carry a fluorescent protein reporter. In biological samples this allows a scientist to directly make a protein of interest fluorescent. The protein location can then be directly tracked, including in live cells.
Limitations
Fluorophores lose their ability to fluoresce as they are illuminated in a process called photobleaching. Photobleaching occurs as the fluorescent molecules accumulate chemical damage from the electrons excited during fluorescence. Photobleaching can severely limit the time over which a sample can be observed by fluorescence microscopy. Several techniques exist to reduce photobleaching such as the use of more robust fluorophores, by minimizing illumination, or by using photoprotective scavenger chemicals.[citation needed]
Fluorescence microscopy with fluorescent reporter proteins has enabled analysis of live cells by fluorescence microscopy, however cells are susceptible to phototoxicity, particularly with short wavelength light. Furthermore, fluorescent molecules have a tendency to generate reactive chemical species when under illumination which enhances the phototoxic effect.[citation needed]
Unlike transmitted and reflected light microscopy techniques, fluorescence microscopy only allows observation of the specific structures which have been labeled for fluorescence. For example, observing a tissue sample prepared with a fluorescent DNA stain by fluorescence microscopy only reveals the organization of the DNA within the cells and reveals nothing else about the cell morphologies.
Computational techniques that propose to estimate the fluorescent signal from non-fluorescent images (such as brightfield) may reduce these concerns.[8] In general, these approaches involve training a deep convolutional neural network on stained cells and then estimating the fluorescence on unstained samples. Thus by decoupling the cells under investigation from the cells used to train the network, imaging can performed quicker and with reduced phototoxicity.
Sub-diffraction techniques
The wave nature of light limits the size of the spot to which light can be focused due to the
Several improvements in microscopy techniques have been invented in the 20th century and have resulted in increased resolution and contrast to some extent. However they did not overcome the diffraction limit. In 1978 first theoretical ideas have been developed to break this barrier by using a 4Pi microscope as a confocal laser scanning fluorescence microscope where the light is focused ideally from all sides to a common focus which is used to scan the object by 'point-by-point' excitation combined with 'point-by-point' detection.[9]
However, the first experimental demonstration of the 4pi microscope took place in 1994.
Integrated correlative microscopy combines a fluorescence microscope with an electron microscope. This allows one to visualize ultrastructure and contextual information with the electron microscope while using the data from the fluorescence microscope as a labelling tool.[11]
The first technique to really achieve a sub-diffraction resolution was STED microscopy, proposed in 1994. This method and all techniques following the RESOLFT concept rely on a strong non-linear interaction between light and fluorescing molecules. The molecules are driven strongly between distinguishable molecular states at each specific location, so that finally light can be emitted at only a small fraction of space, hence an increased resolution.
As well in the 1990s another super resolution microscopy method based on wide field microscopy has been developed. Substantially improved size resolution of cellular
Alternatively, the advent of photoactivated localization microscopy could achieve similar results by relying on blinking or switching of single molecules, where the fraction of fluorescing molecules is very small at each time. This stochastic response of molecules on the applied light corresponds also to a highly nonlinear interaction, leading to subdiffraction resolution.
Fluorescence micrograph gallery
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A z-projection of an osteosarcoma cell, stained with phalloidin to visualise actin filaments. The image was taken on a confocal microscope, and the subsequent deconvolution was done using an experimentally derived point spread function.
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Epifluorescent imaging of the three components in a dividing human cancer cell.CCD camera, then overlaid to give a complete image.
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Endothelial cells under the microscope. Nuclei are stained blue with DAPI, microtubules are marked green by an antibody bound to FITC and actin filaments are labeled red with phalloidin bound to TRITC. Bovine pulmonary artery endothelial (BPAE) cells
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3D dual-color super-resolution microscopy with Her2 and Her3 in breast cells, standard dyes: Alexa 488, Alexa 568. LIMON microscopy
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Human lymphocyte nucleus stained with DAPI with chromosome 13 (green) and 21 (red) centromere probes hybridized (Fluorescent in situ hybridization(FISH))
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Yeast cell membrane visualized by some membrane proteins fused with RFP and GFP fluorescent markers. Imposition of light from both of markers results in yellow color.
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Super-resolution microscopy: Single YFP molecule detection in a human cancer cell. Typical distance measurements in the 15 nm range measured with a Vertico-SMI/SPDMphymod microscope
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Super-resolution microscopy: Co-localization microscopy (2CLM) with GFP and RFP fusion proteins (nucleus of a bone cancer cell) 120.000 localized molecules in a wide-field area (470 µm2) measured with a Vertico-SMI/SPDMphymod microscope
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Fluorescence microscopy of DNA Expression in the Human Wild-Type and P239S Mutant Palladin.
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Fluorescence microscopy images of sun flares pathology in a blood cell showing the affected areas in red.
See also
- Correlative light-electron microscopy
- Elizabeth Harry, pioneer of fluorescence microscopy techniques for visualization of bacterial subcellular proteins
- Fluorescence imaging
- Fluorescence in the life sciences
- Green fluorescent protein (GFP)
- Mercury-vapor lamp
- Microscope
- Scanning electron microscope § Cathodoluminescence
- Stokes shift
- Xenon arc lamp
References
- ^ a b c d Spring KR, Davidson MW. "Introduction to Fluorescence Microscopy". Nikon MicroscopyU. Retrieved 28 September 2008.
- The Nobel Foundation. Retrieved 28 September 2008.
- ISBN 978-1-68108-519-7. Archived from the originalon 14 May 2019. Retrieved 17 December 2017.
- PMID 19489737.
- S2CID 13812696.
- doi:10.7554/eLife.26066.002. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
- S2CID 215619998.
- S2CID 212725023.
- PMID 713859. Archived from the original(PDF) on 4 March 2016. Retrieved 12 August 2013.
- PMID 19829598.)
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: CS1 maint: multiple names: authors list (link - ^ Baarle, Kaitlin van. "Correlative microscopy: Opening up worlds of information with fluorescence". Retrieved 16 February 2017.
- S2CID 49339042, archived from the original(PDF) on 4 March 2016, retrieved 12 August 2013
- S2CID 22811346. Archived from the original(PDF) on 4 March 2016. Retrieved 12 August 2013.
- ]
- S2CID 18162278. Archived from the original(PDF) on 4 March 2016. Retrieved 12 August 2013.
External links
- Fluorophores.org[permanent dead link], the database of fluorescent dyes
- Microscopy Resource Center Archived 22 October 2014 at the Wayback Machine
- animations and explanations on various types of microscopes including fluorescent and confocal microscopes (Université Paris Sud)