Protein–ligand complex
A protein–ligand complex is a complex of a
Interactions
The protein-ligand complex is a reversible
Affinity
The highest possible affinity from a protein towards the ligand, or target molecule, can be observed when the protein has a perfect mirror image of the shape of the target surface together with a charge distribution that complements perfectly the target surface.[7] The affinity between protein and ligand is given by the equilibrium dissociation constant Kd or the inverse of the association constant 1/Ka (or binding constant 1/Kb) that relates the concentrations of the complexed and uncomplexed species in solution.
The dissociation constant is defined as
Kd =
where [L], [P] and [LP] represent molar concentrations of the protein, ligand and complex, respectively.
The lower the Kd value the higher the affinity of the protein for the ligand and vice versa. The Kd value is equivalent to the concentration of the ligand at which one-half of the proteins contain bound ligand.[3][8] Affinity is influenced also by the properties of the solution, like pH, temperature and salt concentration, that may affect the stable state of the proteins and ligands and hence also their interaction and by the presence of other macromolecules that causes macromolecular crowding.[9]
Functions
Protein–ligand complexes can be found in almost any cellular process. Binding of a ligand causes a conformational change in the protein and often also in the ligand. This change initiates a sequence of events leading to different cellular functions. The complexes are formed by different molecules like macromolecules as in protein complexes, protein DNA or protein RNA complexes as well as by proteins that bind smaller molecules like peptides, lipids, carbohydrates, small nucleic acids. They may have various functions within the cell: catalysis of chemical reactions (enzyme-substrate), defense of the organism through the immune system (antibodies antigen complexes), signal transduction (receptor-ligand complexes) that consists of a transmembrane receptor that upon binding the ligand activates an intracellular cascade. Lipophilic hormonal receptor complexes can pass the nuclear membrane where transcription may be regulated.[8]
Example
Protein-Ligand complex is essential in many of the cellular processes that occur within organisms. One of these examples is the
See also
References
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- ^ Monod J (1970). Le hasard et la nécessité. Essai sur la philosophie naturelle de la biologie moderne [Chance and necessity Essay on the natural philosophy of modern biology] (in French). Le Seuil.
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- ^ a b Lodish H (1996). Molecular Cell Biology. Scientific American Books. pp. 854–918.
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- ^ PMID 26236379.