List of sequenced archaeal genomes
This list of sequenced archaeal genomes contains all the
Currently in this list there are 39 genomes belonging to Crenarchaeota species, 105 belonging to the Euryarchaeota, 1 genome belonging to Korarchaeota and to the Nanoarchaeota, 3 belonging to the Thaumarchaeota and 1 genome belonging to an unclassified Archaea, totalling 150 Archaeal genomes.
Crenarchaeota
Acidilobales
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Acidilobus saccharovorans | 345-15 | 1,496,000 | 1,547 | [2] | CP001742 | 2010 |
Desulforococcales
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Aeropyrum pernix | K1 | 1,669,695 | 2,694 | [3] | NC_000854 (NCBI Reference Sequence) | 1999 |
kamchatkensis
|
1221n | 1,365,000 | 1,521 | [4] | CP001140 | 2009 |
butylicus
|
DSM 5456 | 1,667,000 | 1,669 | [5] | CP000493 | 2007 |
hospitalis
|
KIN4/I, DSM 18386 | 1,297,000 | 1,496 | [6] | CP000816 | 2008 |
aggregans
|
AQ1.S1, DSM 17230 | 1,875,000 | 2,042 | [7] | CP002098 | 2010 |
Pyrolobus fumarii | 1A, DSM 11204 | 1,843,000 | 2,038 | [8] | CP002838 | 2011 |
hellenicus
|
P8, DSM 12710 | 1,580,000 | 1,716 | [9] | CP002051 | 2011 |
marinus
|
F1, DSM 3639 | 1,570,000 | 1,659 | [10] | CP000575 | 2011 |
aggregans
|
M11TL, DSM 11486 | 1,316,000 | 1,457 | [11] | CP001939 | 2010 |
Sulfolobales
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Acidianus hospitalis | W1 | 2,137,000 | 2,424 | [12] | CP002535 | 2011 |
cuprina
|
Ar-4 | 1,840,000 | 2,077 | [13] | CP002656 | 2011 |
Metallosphaera sedula | DSM 5348 | 2,191,000 | 2,347 | [14] | CP000682 | 2008 |
Sulfolobus acidocaldarius | DSM 639 | 2,225,959 | 2,223 | [15] | CP000077 | 2005 |
islandicus
|
HVE10/4 | 2,655,000 | [16] | CP002426 | 2011 | |
islandicus
|
L.D.8.5 | 2,722,000 | 2,996 | [17] | Chromosome CP001731 Plasmid pLD8501 CP001732 |
2009 |
islandicus
|
L.S.2.15 | 2,736,000 | 3,068 | [17] | CP001399 | 2009 |
islandicus
|
M.14.25 | 2,608,000 | 2,900 | [17] | CP001400 | 2009 |
islandicus
|
M.16.27 | 2,692,000 | 2,956 | [17] | CP001401 | 2009 |
islandicus
|
M.16.4 | 2,586,000 | 2,869 | [17] | CP001402 | 2009 |
islandicus
|
REY15A | 2,522,000 | [16] | CP002425 | 2011 | |
islandicus
|
Y.G.57.14 | 2,702,000 | 3,079 | [17] | CP001403 | 2009 |
islandicus
|
Y.N.15.51 | 2,812,000 | 3,318 | [17] | Chromosome CP001404 Plasmid pYN01 CP001405 |
2009 |
islandicus
|
LAL14/1 | 2,465,177 | 2,601 | [18] | CP003928 | 2013 |
Sulfolobus solfataricus | P2 | 2,992,245 | 2,995 | [19] | AE006641 | 2001 |
Sulfolobus solfataricus | 98/2 | 2,668,000 | 2,728 | DOE Joint Genome Institute | CP001800 | 2009 |
Sulfolobus tokodaii | 7 | 2,694,765 | 2,826 | [20] | BA000023 | 2001 |
Thermoproteales
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Caldivirga maquilingensis
|
IC-167 | 2,077,000 | 2,011 | DOE Joint Genome Institute | CP000852 | 2007 |
Pyrobaculum aerophilum | IM2 | 2,222,430 | 2,605 | [21] | AE009441 | 2002 |
arsenaticum
|
PZ6, DSM 13514 | 2,121,000 | 2,410 | DOE Joint Genome Institute | CP000660 | 2007 |
calidifontis
|
JCM 11548 | 2,009,000 | 2,213 | DOE Joint Genome Institute | CP000561 | 2007 |
islandicum
|
DSM 4184 | 1,826,000 | 2,063 | DOE Joint Genome Institute | CP000504 | 2006 |
Pyrobaculum sp. 1860 | Unpublished[22] | CP003098 | 2011 | |||
pendens
|
Hrk 5 | 1,781,000 | 1,930 | [23] | Chromosome CP000505 Plasmid pTPEN01 CP000506 |
2008 |
neutrophilus
|
V24Sta | 1,769,000 | 2,053 | DOE Joint Genome Institute | CP001014 | 2008 |
tenax
|
Kra1 | 1,841,000 | 2,100 | [24] | FN869859 | 2011 |
uzoniensis
|
768-20 | 1,936,000 | 2,229 | [25] | CP002590 | 2011 |
distributa
|
DSM 14429 | 2,374,000 | 2,592 | [26] | CP002100 | 2010 |
Vulcanisaeta moutnovskia | 768-28 | 2,298,000 | 2,393 | [27] | CP002529 | 2011 |
Euryarchaeota
Archaeoglobi
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
fulgidus
|
DSM4304 | 2,178,400 | 2,407 | [28] | AE000782 | 1997 |
veneficus
|
SNP6, DSM 11195 | 1,901,000 | 2,194 | DOE Joint Genome Institute | CP002588 | 2011 |
Archaeoglobus profundus | Av18, DSM 5631 | 1,563,000 | 1,911 | [29] | Chromosome CP001857 Plasmid pArcpr01 CP001858 |
2010 |
placidus
|
AEDII12DO, DSM 10642 | 2,196,000 | 2,622 | [30] | CP001899 | 2011 |
Halobacteria
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
jeotgali
|
B3, DSM 18796 | 3,690,000 | 3925 | [31] | Chromosome I CP002062 Plasmid 1 CP002063 |
2010 |
hispanica
|
CGMCC 1.2049 | 3,484,000 | 3,561 | [32] | Chromosome I CP002921 |
2011 |
Haloarcula marismortui | ATCC 43049 | 3,131,724 | 3,131 | [33] | Chromosome I AY596297 Chromosome II AY596298 |
2004 |
Halobacterium salinarum | R1, DSM 671 | 2,000,000 | 2,801 | [34] | Chromosome NC_010364 Plasmid PHS1 NC_010366 |
2008 |
Halobacterium species | NRC-1 | 2,014,239 | 2,058 | [35] | Chromosome NC_002607 |
2000 |
lacisalsi
|
AJ5, JCM 12983 | 4,320,000 | 4,682 | [36] | AGFZ00000000 | 2011 |
Haloferax volcanii | DS2 | [37] | Chromosome CP001956 Plasmid pHV1 CP001957 |
2010 | ||
borinquense
|
PR3, DSM 11551 | 3,920,000 | 4,059 | [38] | Chromosome CP001690 Plasmid pHBOR01 CP001691 |
2009 |
mukohataei
|
arg-2, DSM 12286 | 3,332,000 | 3,475 | [39] | Chromosome CP001688 Plasmid pHmuk01 CP001689 |
2009 |
xanaduensis
|
SH-6 | 3,668,000 | 3,685 | DOE Joint Genome Institute | Chromosome CP002839 Plasmid pHALXA01 CP002840 |
2011 (Chromosome) |
Haloquadratum walsbyi | C23, DSM 16854 | 3,148,000 | [40] | Chromosome FR746099 Plasmid PL6A FR746101 |
2011 | |
Haloquadratum walsbyi | HBSQ001, DSM 16790 | 3,132,000 | 2,914 | [41] | Chromosome AM180088 Plasmid PL47 AM180089 |
2006 |
Halorhabdus tiamatea | SARL4B | 3,840,000 | 4,034 | [42] | AFNT00000000 | 2011 |
Halorhabdus utahensis | AX-2, DSM 12940 | 3116 Kb | 3076 | [43] | CP001687 | 2009 |
Halorubrum lacusprofundi | ATCC 49239 | 4,300,000 | 3,725 | DOE Joint Genome Institute | Chromosome 1 CP001365 |
2009 (Chromosomes 1 and 2) |
Haloterrigena turkmenica | VKM B-1734, DSM 5511 | 5,440,000 | 5,351 | [44] | Chromosome CP001860 Plasmid pHTUR01 CP001861 |
2010 |
Natrialba asiatica
|
ATCC 700177 | [45] | Survey | 2004 | ||
magadii
|
ATCC 43099 | 3,751,000 | 4,364 | DOE Joint Genome Institute | CP001932 | 2010 |
pharaonis
|
DSM2160 | 2,595,221 | 2,675 | [46] | Chromosome CR936257 |
2005 |
Methanobacteria
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Methanobacterium sp. AL-21 | 2,583,000 | DOE Joint Genome Institute, Univ of Illinois at Urbana-Champaign |
CP002551 | 2011 | ||
Methanobacterium sp. SWAN-1 | 2,546,000 | 2,500 | DOE Joint Genome Institute, Univ Illinois at Urbana-Champaign |
CP002772 | 2011 | |
Methanobacterium thermoautotrophicum | delta-H | 1,751,377 | 1,869 | [47] | AE000666 | 1997 |
ruminantium
|
M1 | 2,937,000 | 2,283 | [48] | CP001719 | 2010 |
Methanobrevibacter smithii | DSM 2375 | 1,704,000 | 1,748 | Washington University | ABYW00000000 | 2008 |
Methanobrevibacter smithii | F1, DSM 2374 | 1,707,000 | 1,749 | Washington University | ABYV00000000 | 2010 |
Methanobrevibacter smithii | PS, ATCC 35061 | 1,853,000 | 1,841 | [49] | CP000678 | 2007 |
Methanobrevibacter smithii | TS94A | 1,889,000 | 1,808 | [50] | AELU00000000 | 2011 |
Methanobrevibacter smithii | TS94B | 1,886,000 | 1,856 | [50] | AELV00000000 | 2011 |
Methanobrevibacter smithii | TS94C | 1,910,000 | 1,812 | [50] | AELW00000000 | 2011 |
Methanobrevibacter smithii | TS95A | 1,992,000 | 1,961 | [50] | AELX00000000 | 2011 |
Methanobrevibacter smithii | TS95B | 1,972,000 | 1,895 | [50] | AELY00000000 | 2011 |
Methanobrevibacter smithii | TS95C | 1,978,000 | 1,874 | [50] | AELZ00000000 | 2011 |
Methanobrevibacter smithii | TS95D | 2,011,000 | 1,860 | [50] | AEMA00000000 | 2011 |
Methanobrevibacter smithii | TS96A | 1,975,000 | 1,852 | [50] | AEMB00000000 | 2011 |
Methanobrevibacter smithii | TS96B | 1,869,000 | 1,742 | [50] | AEMC00000000 | 2011 |
Methanobrevibacter smithii | TS96C | 1,818,000 | 1,764 | [50] | AEMD00000000 | 2011 |
Methanobrevibacter smithii | TS145A | 1,782,000 | 1,786 | [50] | AEKU00000000 | 2011 |
Methanobrevibacter smithii | TS145B | 1,797,000 | 1,880 | [50] | AELL00000000 | 2011 |
Methanobrevibacter smithii | TS146A | 1,792,000 | 1,823 | [50] | AELM00000000 | 2011 |
Methanobrevibacter smithii | TS146B | 1,794,000 | 1,814 | [50] | AELN00000000 | 2011 |
Methanobrevibacter smithii | TS146C | 1,947,000 | 2,355 | [50] | AELO00000000 | 2011 |
Methanobrevibacter smithii | TS146D | 1,713,000 | 1,693 | [50] | AELP00000000 | 2011 |
Methanobrevibacter smithii | TS146E | 1,952,000 | 1,887 | [50] | AELQ00000000 | 2011 |
Methanobrevibacter smithii | TS147A | 2,008,000 | 1,969 | [50] | AELR00000000 | 2011 |
Methanobrevibacter smithii | TS147B | 1,965,000 | 1,911 | [50] | AELS00000000 | 2011 |
Methanobrevibacter smithii | TS147C | 1,973,000 | 2,014 | [50] | AELT00000000 | 2011 |
stadtmanae
|
DSM 3091 | 1,767,403 | 1,534 | [51] | CP000102 | 2005 |
Methanothermobacter marburgensis | Marburg DSM 2133 | 1,634,000 | 1,806 | [52] | CP001710 | 2010 |
Methanothermus fervidus | V24S, DSM 2088 | 1,243,000 | 1,361 | [53] | CP002278 | 2010 |
Methanococci
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
fervens
|
AG86 | 1,485,000 | 1,663 | DOE Joint Genome Institute | Chromosome CP001696 Plasmid pMEFER01 CP001697 |
2009 (Chromosome) |
infernus
|
ME | 1,328,000 | 1,513 | DOE Joint Genome Institute | CP002009 | 2010 |
Methanocaldococcus jannaschii | DSM 2661 | 1,664,970 | 1,715 | [54] | Chromosome: L77117 |
1996 |
vulcanius
|
M7, DSM 12094 | 1,746,000 | 1,808 | DOE Joint Genome Institute | Chromosome CP001787 |
2009 |
Methanocaldococcus sp. FS406-22 | 1,760,000 | 1,893 | DOE Joint Genome Institute | Chromosome CP001901 Plasmid pFS01 CP001902 |
2010 (Chromosome) | |
aeolicus
|
Nankai-3 | 1,569,000 | 1,554 | DOE Joint Genome Institute | CP000743 | 2007 |
Methanococcus maripaludis | C5 | 1,780,000 | 1,896 | DOE Joint Genome Institute | CP000609 | 2007 |
Methanococcus maripaludis | C6 | 1,744,000 | 1,874 | DOE Joint Genome Institute | CP000867 | 2007 |
Methanococcus maripaludis | C7 | 1,772,000 | 1,858 | DOE Joint Genome Institute | CP000745 | 2007 |
Methanococcus maripaludis | S2 | 1,661,137 | 1,722 | [55] | NC_005791 (NCBI Reference Sequence) | 2004 |
Methanococcus maripaludis | X1 | 1,746,000 | 1,892 | [56] | CP002913 | 2011 |
vannielii
|
SB | 1,720,000 | 1,755 | DOE Joint Genome Institute | CP000742 | 2007 |
voltae
|
A3 | 1,936,000 | 1,768 | DOE Joint Genome Institute | CP002057 | 2010 |
Methanothermococcus okinawensis | IH1 | 1,662,000 | 1,662 | DOE Joint Genome Institute | Chromosome CP002792 Plasmid pMETOK01 CP002793 |
2011 (Chromosome) |
igneus
|
Kol5, DSM 5666 | 1,854,000 | 1,843 | DOE Joint Genome Institute | CP002737 | 2011 |
Methanomicrobia
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Candidatus Methanoregula boonei | 6A8 | 2,542,000 | 2,518 | DOE Joint Genome Institute[57] | CP000780 | 2007 |
Methanocella sp. Rice Cluster I (RC-I) | MRE50 | 3,179,916 | 3103 | Genome sequence,[58] then taxonomic placement[59] | AM114193 | 2005 |
Methanocella paludicola | SANAE | 2,957,635 | 3004 | [60] | AP011532 | 2011 |
conradii
|
HZ254 | 1,316,380 | 2512 | [61] | CP003243 | 2012 |
Methanococcoides burtonii | DSM6242 | 2,575,032 | 2,273 | [62] | CP000300 | 2009 |
labreanum
|
Z | 1,804,000 | 1,830 | [63] | CP000559 | 2009 |
marisnigri
|
JR1, DSM 1498 | 2,478,000 | 2,560 | [64] | CP000562 | 2009 |
evestigatum
|
Z-7303 | 2,406,232 | 2,254 | DOE Joint Genome Institute[65] | Chromosome: CP002069 Plasmid pMETEV01: CP002070 |
2010 (Chromosome) |
Methanohalophilus mahii | SLP, DSM 5219 | 2,012,000 | 2,095 | [66] | CP001994 | 2010 |
petrolearius
|
SEBR 4847, DSM 11571 | 2,843,000 | 2,881 | [67] | CP002117 | 2011 |
zhilinae
|
WeN5, DSM 4017 | 2,138,000 | 2,086 | CP002101 | 2010 | |
Methanosaeta concilii | GP-6 | 3,008,000 | [68] | CP002565 | 2010 | |
harundinacea
|
6Ac | 2,559,000 | [22] | CP003117 | 2011 | |
Methanosaeta thermophila | PT | 1,879,000 | 1,785 | DOE Joint Genome Institute | CP000477 | 2006 |
Methanosarcina acetivorans | C2A | 5,751,492 | 4,540 | [69] | AE010299 | 2002 |
Methanosarcina barkeri | Fusaro, DSM 804 | 4,837,408 | 3,607 | [70] | Chromosome CP000099 Plasmid 1 CP000098 |
2006 (Chromosome) |
mazei
|
Go1 | 4,096,345 | 3,371 | [71] | AE008384 | 2002 |
palustris
|
E1-9c, DSM 19958 | 2,922,000 | 2,859 | DOE Joint Genome Institute | CP001338 | 2008 |
hungatei
|
JF-1 | 3,544,738 | 3,139 | DOE Joint Genome Institute | CP000254 | 2006 |
Methanopyri
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Methanopyrus kandleri
|
AV19 | 1,694,969 | 1,691 | [72] | AE009439 | 2002 |
Thermococci
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Pyrococcus abyssi | GE5 | 1,765,118 | 1,784 | [73] | NC_000868 (NCBI Reference Sequence) | 2000 |
Pyrococcus furiosus | DSM 3638 | 1,908,256 | 2,065 | [74] | AE009950 | 1999 |
Pyrococcus horikoshii | OT3 | 1,738,505 | 2,061 | [75] | NC_000961 (NCBI Reference Sequence) | 1998 |
Pyrococcus sp. NA2 | 1,861,000 | 1,984 | [22] | CP002670 | 2011 | |
Pyrococcus yayanosii | CH1 | 1,716,000 | 1,952 | [76] | CP002779 | 2011 |
Thermococcus barophilus | MP, DSM 11836 | 2,010,000 | 2,196 | [77] | CP002372 | 2011 |
Thermococcus gammatolerans | EJ3 | 2,045,000 | 2,206 | [78] | CP001398 | 2009 |
Thermococcus kodakaraensis | KOD1 | 2,088,737 | 2,306 | [79] | AP006878 | 2005 |
Thermococcus onnurineus | NA1 | 1,847,000 | 2,027 | [80] | NC_011529 (NCBI Reference Sequence) | 2008 |
sibiricus
|
MM 739 | 1,845,000 | 2,085 | [81] | CP001463 | 2009 |
Thermococcus sp. 4557 | 2,011,000 | 2,181 | [82] | CP002920 | 2011 | |
Thermococcus sp. AM4 | 2,086,000 | 2,279 | [83] | CP002952 | 2011 |
Thermoplasmata
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
acidarmanus
|
Fer1 | 1,865,000 | 1,742 | [84] | AABC00000000 | 2007 |
Picrophilus torridus | DSM 9790 | 1,545,895 | 1,535 | [85] | AE017261 | 2004 |
Thermoplasma acidophilum | DSM 1728 | 1,564,906 | 1,478 | [86] | NC_002578 (NCBI Reference Sequence) | 2000 |
Thermoplasma volcanium | GSS1 | 1,584,804 | 1,526 | [87] | NC_002689 (NCBI Reference Sequence) | 2000 |
Unclassified Euryarchaeota
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Aciduliprofundum boonei | T469 | 1,486,000 | 1,587 | DOE Joint Genome Institute | CP001941 | 2010 |
Korarchaeota
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Candidatus Korarchaeum cryptofilum | OPF8 | 1,590,000 | 1,661 | [88] | CP000968 | 2008 |
Nanoarchaeota
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Nanoarchaeum equitans | Kin4-M | 490,885 | 536 | [89] | AE017199 | 2003 |
Thaumarchaeota
Cenarchaeales
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Cenarchaeum symbiosum | A | 2,045,000 | 2,066 | [90] | DP000238 | 2006 |
Nitrosopumilales
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
Candidatus Nitrosoarchaeum limnia | SFB1 | 1,769,000 | 2,171 | [91] | AEGP00000000 | 2011 |
Nitrosopumilus maritimus
|
SCM1 | 1,645,000 | 1,842 | [92] | CP000866 | 2010 |
Unclassified Archaea
Species | Strain | Base Pairs | Genes | Reference | GenBank identifier | Publication year |
---|---|---|---|---|---|---|
halophilic archaeon sp. DL31 | Unpublished[22] | CP002988 | 2011 |
See also
- Genome project
- Human microbiome project
- Lists of sequenced genomes
References
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External links
- GOLD:Genomes OnLine Database v 2.0
- SUPERFAMILY comparative genomics database Includes genomes of completely sequenced archaea, and sophisticated datamining plus visualisation tools for analysis