Filoviridae

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Filoviridae
Ebolavirus structure and genome
Electron micrograph of Marburg virus
Virus classification Edit this classification
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum:
Negarnaviricota
Class: Monjiviricetes
Order: Mononegavirales
Family: Filoviridae
Genera

Filoviridae (

primates in the form of viral hemorrhagic fevers.[3]

All filoviruses are classified by the US as

Use of term

The

Dianlovirus, Ebolavirus, Marburgvirus, Striavirus, and Thamnovirus and is included in the order Mononegavirales.[13] The members of the family (i.e. the actual physical entities) are called filoviruses or filovirids.[13] The name Filoviridae is derived from the Latin noun filum (alluding to the filamentous morphology of filovirions) and the taxonomic suffix -viridae (which denotes a virus family).[3]

Note

According to the rules for taxon naming established by the International Committee on Taxonomy of Viruses (ICTV), the name Filoviridae is always to be capitalized, italicized, never abbreviated, and to be preceded by the word "family". The names of its members (filoviruses or filovirids) are to be written in lower case, are not italicized, and used without articles.[13][14]

Life cycle

Replication cycle of filoviruses and vectors
Replication cycle of filoviruses at and inside host cell

The filovirus

promoter located at the 3' end of the genome. Transcription either terminates after a gene or continues to the next gene downstream. This means that genes close to the 3' end of the genome are transcribed in the greatest abundance, whereas those toward the 5' end are least likely to be transcribed. The gene order is therefore a simple but effective form of transcriptional regulation. The most abundant protein produced is the nucleoprotein, whose concentration in the cell determines when the RdRp switches from gene transcription to genome replication. Replication results in full-length, positive-stranded antigenomes that are in turn transcribed into negative-stranded virus progeny genome copies. Newly synthesized structural proteins and genomes self-assemble and accumulate near the inside of the cell membrane. Virions bud off from the cell, gaining their envelopes from the cellular membrane they bud from. The mature progeny particles then infect other cells to repeat the cycle.[12]

Family inclusion criteria

Schematic representation of the filovirus genome organization.

A virus that fulfills the criteria for being a member of the order Mononegavirales is a member of the family Filoviridae if:[13][14]

  • it causes viral hemorrhagic fever in certain primates
  • it infects primates, pigs or bats in nature
  • it needs to be adapted through serial passage to cause disease in rodents
  • it exclusively replicates in the cytoplasm of a host cell
  • it has a genome ≈19 kbp in length
  • it has an RNA genome that constitutes ≈1.1% of the virion mass
  • its genome has a molecular weight of ≈4.2×106
  • its genome contains one or more gene overlaps
  • its genome contains seven genes in the order 3'-UTR-NP-VP35-VP40-GP-VP30-VP24-L-5'-UTR
  • its VP24 gene is not homologous to genes of other mononegaviruses
  • its genome contains
    transcription
    initiation and termination signals not found in genomes of other mononegaviruses
  • it forms nucleocapsids with a buoyant density in CsCl of ≈1.32 g/cm3
  • it forms nucleocapsids with a central axial channel (≈10–15 nm in width) surrounded by a dark layer (≈20 nm in width) and an outer helical layer (≈50 nm in width) with a cross striation (periodicity of ≈5 nm)
  • it expresses a class I fusion glycoprotein that is highly N- and O-glycosylated and acylated at its cytoplasmic tail
  • it expresses a primary matrix protein that is not glycosylated
  • it forms virions that bud from the plasma membrane
  • it forms virions that are predominantly filamentous (U- and 6-shaped) and that are ≈80 nm in width, and several hundred nm and up to 14 μm in length
  • it forms virions that have surface projections ≈7 nm in length spaced ≈10 nm apart from each other
  • it forms virions with a molecular mass of ≈3.82×108; an S20W of at least 1.40; and a buoyant density in potassium tartrate of ≈1.14 g/cm3
  • it forms virions that are poorly
    neutralized in vivo

Family organization

Family Filoviridae: genera, species, and viruses
Genus name Species name Virus name (abbreviation)
Cuevavirus
Lloviu cuevavirus
Lloviu virus (LLOV)
Dianlovirus
Mengla dianlovirus
Měnglà virus
(MLAV)
Ebolavirus Bombali ebolavirus Bombali virus (BOMV)
Bundibugyo ebolavirus
Bundibugyo virus
(BDBV; previously BEBOV)
Reston ebolavirus
Reston virus (RESTV; previously REBOV)
Sudan ebolavirus
Sudan virus
(SUDV; previously SEBOV)
Taï Forest ebolavirus
Taï Forest virus
(TAFV; previously CIEBOV)
Zaire ebolavirus
Ebola virus
(EBOV; previously ZEBOV)
Marburgvirus
Marburg marburgvirus
Marburg virus (MARV)
Ravn virus (RAVV)
Striavirus Xilang striavirus Xīlǎng virus (XILV)
Thamnovirus Huangjiao thamnovirus Huángjiāo virus (HUJV)

Phylogenetics

The mutation rates in these genomes have been estimated to be between 0.46 × 10−4 and 8.21 × 10−4 nucleotide substitutions/site/year.[15] The most recent common ancestor of sequenced filovirus variants was estimated to be 1971 (1960–1976) for Ebola virus, 1970 (1948–1987) for Reston virus, and 1969 (1956–1976) for Sudan virus, with the most recent common ancestor among the four species included in the analysis (Ebola virus, Tai Forest virus, Sudan virus, and Reston virus) estimated at 1000–2100 years.[16] The most recent common ancestor of the Marburg and Sudan species appears to have evolved 700 and 850 years before present respectively. Although mutational clocks placed the divergence time of extant filoviruses at ~10,000 years before the present, dating of orthologous endogenous elements (paleoviruses) in the genomes of hamsters and voles indicated that the extant genera of filovirids had a common ancestor at least as old as the Miocene (~16–23 million or so years ago).[17]

Filoviridae cladogram is the following:[18][19]

Filoviridae 

?
Dehong virus (DEHV)

Orthomarburgvirus marburgense (Marburg virus & Ravn virus)

Dianlovirus menglaense = Měnglà virus (MLAV)

Tapjovirus bothropis = Tapajós virus (TAPV)

Striavirus antennarii = Xīlǎng virus (XILV)

 Thamnovirus 

Thamnovirus percae = Fiwi virus (FIWIV)

Thamnovirus kanderense = Kander virus (KNDV)

Thamnovirus thamnaconi = Huángjiāo virus (HUJV)

Oblavirus percae = Oberland virus (OBLV)

Paleovirology

Filoviruses have a history that dates back several tens of million of years.

Myotis have been maintained by selection.[23]

Vaccines

There are presently very limited vaccines for known filovirus.[24] An effective vaccine against EBOV, developed in Canada,[25] was approved for use in 2019 in the US and Europe.[26][27] Similarly, efforts to develop a vaccine against Marburg virus are under way.[28]

Mutation concerns and pandemic potential

There has been a pressing concern that a very slight genetic mutation to a filovirus such as

EBOV could result in a change in transmission system from direct body fluid transmission to airborne transmission, as was seen in Reston virus (another member of genus Ebolavirus) between infected macaques. A similar change in the current circulating strains of EBOV could greatly increase the infection and disease rates caused by EBOV. However, there is no record of any Ebola strain ever having made this transition in humans.[29]

The

Ebola virus strain with aerosol transmission capability emerging in the future as a serious threat to national security and has collaborated with the Centers for Disease Control and Prevention (CDC) to design methods to detect EBOV aerosols.[30]

References

  1. ^ "Filoviridae". Merriam-Webster.com Dictionary. Retrieved July 28, 2018.
  2. PMID 31021739
    .
  3. ^ .
  4. ^ US Animal and Plant Health Inspection Service (APHIS) and US Centers for Disease Control and Prevention (CDC). "National Select Agent Registry (NSAR)". Retrieved 2011-10-16.
  5. ^ US Department of Health and Human Services. "Biosafety in Microbiological and Biomedical Laboratories (BMBL) 5th Edition". Retrieved 2011-10-16.
  6. ^ US National Institutes of Health (NIH), US National Institute of Allergy and Infectious Diseases (NIAID). "Biodefense — NIAID Category A, B, and C Priority Pathogens". Archived from the original on 2011-10-22. Retrieved 2011-10-16.
  7. ^ US Centers for Disease Control and Prevention (CDC). "Bioterrorism Agents/Diseases". Archived from the original on July 22, 2014. Retrieved 2011-10-16.
  8. ^ The Australia Group. "List of Biological Agents for Export Control". Archived from the original on 2011-08-06. Retrieved 2011-10-16.
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  18. PMID 34808081.{{cite journal}}: CS1 maint: multiple names: authors list (link
    )
  19. doi:10.1101/2023.08.07.552227.{{cite journal}}: CS1 maint: multiple names: authors list (link
    )
  20. .
  21. .
  22. .
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  24. .
  25. .
  26. ^ Research, Center for Biologics Evaluation and (2020-01-27). "ERVEBO". FDA.
  27. ^ CZARSKA-THORLEY, Dagmara (2019-10-16). "Ervebo". European Medicines Agency. Retrieved 2020-05-03.
  28. PMID 30567978
    .
  29. ^ Kelland, Kate (19 September 2014). "Scientists see risk of mutant airborne Ebola as remote". Reuters. Retrieved 10 October 2014.
  30. ^ "Feature Article: New Tech Makes Detecting Airborne Ebola Virus Possible". Department of Homeland Security. 20 April 2021. Retrieved 13 December 2021.

Further reading

External links