History of coronavirus
Coronaviruses |
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The history of coronaviruses is an account of the discovery of the diseases caused by
A new brain disease of mice (murine
.In 1961, a virus was obtained from a school boy in
Other coronaviruses have been discovered from pigs, dogs, cats, rodents, cows, horses, camels, Beluga whales, birds and bats. As of 2022, 52 species are described. Bats are found to be the richest source of different species of coronaviruses. All coronaviruses originated from a common ancestor about 293 million years ago.
Arthur Frederick Schalk and Merle C. Fawn at the
The causative pathogen could not be identified. Charles D. Hudson and Fred Robert Beaudette at the
Unaware of the developments, Leland David Bushnell and Carl Alfred Brandly at the Kansas Agricultural Experiment Station studied a similar case which they called "gasping disease" due to the apparent symptom. They had known the disease since 1928. Their report in 1933 titled "Laryngotracheitis in chicks" published in the Poultry Science indicated a clear distinction of infectious bronchitis from infectious laryngotracheitis (cause by a herpes virus) as the main organ affected was the bronchi.[8] The bronchi infection resulted in severe gasping and swift death due to inability to eat food. It was also found that the pathogens could not be bacteria or protozoans as they passed through membranes (Berkefield filter) that would block those pathogens.[2] The isolation and identification of the pathogen as a virus was reported as:
In several experiments we have reproduced the disease in chicks by the intratracheal, subcutaneous and intraperitoneal injection of Berkefeld filtered material. The chicks developed typical gasping symptoms after various periods of incubation, different groups of chicks first showing symptoms in six, seventeen, nineteen, etc., days after receiving the filtrate... The disease may also be transferred by means of filtrates of spleen, liver, and kidney tissues and by the transfer of bacteriologically sterile blood.[8]
This was the discovery of infectious bronchitis virus (IBV), the first coronavirus. But Bushnell and Brandy made an erroneous remark by saying, "The symptoms and lesions in the chicks [caused by IBV] are similar to those seen in so-called laryngotracheitis of adult birds and are probably due to the same agent."[8]
In 1936, Jerry Raymond Beach and Oscar William Schalm at the University of California, Berkeley, reexamined Bushnell and Brady's experiment with a conclusion that infectious laryngotracheitis and infectious bronchitis with their causative viruses were different. (In 1931, Beach had discovered the virus of infectious laryngotracheitis, now called Gallid alphaherpesvirus 1.[9]) They concluded that:
- It was found that chickens that recovered from an infection with one of the two strains of virus were refractory to further infection with either strain. It was also found that the sera from chickens that have recovered from an infection with one strain of the virus would neutralize virus of either strain. These results show the identity of the two strains of virus.
- Chickens refractory to infection with this virus were shown to be susceptible to the virus of laryngotracheitis. Likewise, chickens refractory to the latter virus were susceptible to the former. These results demonstrate that the two viruses are distinct from one another.[10]
Hudson and Beaudette later in 1937 were able to culture IBV for the first time using chicken embryos.[11][5] This specimen, known as the Beaudette strain, became the first coronavirus to have its genome completely sequenced in 1987.[12]
In 1949, Francis Sargent Cheevers, Joan B. Daniels, Alwin M. Pappenheimer and Orville T. Bailey investigated the case of brain disease (murine
In the autumn of 1950 there was a sudden outbreak of fatal hepatitis among laboratory mice (Parkes or P strains) at the
In 1959, John A. Morris at the National Institutes of Health, Bethesda, discovered a new mouse virus, which he named H747, from samples in Japan. When he compared the virus with JHM and MHV using serological tests, he found that they were both antigenically related, for which he created a common name "hepatoencephalitis group of murine viruses."[20] In 1961, Robert A. Manaker and his team at the National Cancer Institute, Bethesda, reported the discovery of a new virus (designated as MHV-A59) from murine leukemia virus-infected mice, remarking that it was a member of the hepatoencephalitis group.[21] The virus primary cause fatal hepatitis and encephalitis.[22] Pneumonia-causing rat coronavirus (RCV) discovered in 1970,[23] and sialodacryoadenitis virus (SDAV), which infects nasal cavities, lungs, salivary glands and the Harderian gland in rats, discovered in 1972[24] were found to be the same kind of hepatoencephalitis viruses.[22]
Human coronaviruses were discovered as one of the many causative viruses of common cold. Research on the study of common cold originated when the British
During 1960-1961, Tyrrell's team collected throat swabs from 170 school boys having common cold at a boarding school in Epsom, Surrey. England. Among few samples that could not be cultured in any of the culture media, a specimen designated B814, collected on 17 February 1961, was particularly infectious among healthy volunteers.[35] There was no evidence whether the pathogen in B814 was a bacterium or a virus as all bacterial and viral culture methods available showed negative results. In the early 1965, while visiting the University of Lund in Sweden to receive a honorary doctorate, Andrewes learned of Bertil Hoorn who had developed a culture method for viruses using human trachea tissue.[3] Hoorn had successfully cultured influenza viruses.[36] After learning about these developments from Andrewes, Tyrrell invited Hoorn to visit CCRU. Using the new culture method, they were able to grow many viruses which could not be maintained in other culture methods.[37]
Then B814 could be maintained in the new human tracheal culture and experimentally passed on to healthy volunteers by nasal inoculation.
Discovery of the structure
Viruses cannot be seen normally with light microscopes. It was only with the development of electron microscopy that viruses could be visualised and structurally elucidated. Reginald L. Reagan, Jean E. Hauser, Mary G. Lillie, and Arthur H. Craige Jr. of the
D.M. Berry at the
These "spikes" were often seen over part of the surface only and were less densely packed than those seen in influenza viruses. They varied considerably in shape. Commonly they appeared to be attached to the virus by a very narrow neck and to thicken towards their distal ends, sometimes forming a bulbous mass 90-110 Å in diameter.[47]
J. F. David-Ferreira and R. A. Manaker from the National Cancer Institute, Bethesda, were the first to study the structure of MHV in 1965. They also observed the surface projections as on IBV, stating, "The outer surface of the particle is covered by 'spicules'."[48]
In 1966, Tyrrell sought the help of Anthony Peter Waterson at the
Tyrrell supplied the human virus samples B814 and 229E, which Almeida analysed using transmission electron microscopy. The human viruses showed the same fundamental structures with that of a chicken virus (IBV). Almeida and Tyrrell published their findings in the April 1967 issue of the Journal of General Virology, in which they concluded:
Probably the most interesting finding from these experiments was that two human respiratory viruses, 229 E and B814 are morphologically identical with avian infectious bronchitis. Their biological properties, as far as they are known, are consistent with this. Both the human viruses are ether sensitive as is avian infectious bronchitis 229 E, have a similar size by filtration and multiply in the presence of an inhibitor of DNA synthesis.[51]
In 1967, Kenneth McIntosh and co-workers at the National Institute of Health, Bethesda, reported the structure of common cold viruses they collected from fellow workers during 1965-1966. They found six of their samples had common characters with B814.[52] Two samples (designated OC38 and OC43, as the number of specimen in organ culture[1]) were particularly virulent and caused encephalitis in experimental mice. They compared the structure of one of their samples numbered 501 (OC43) with those of 229E, IBV and influenza virus. It was so identical to IBV that they called the human viruses as "IBV-like viruses". They made a definitive description as:
All "IBV-like" viruses, 229E, and IBV itself show the following characteristics: (1) an over-all diameter of 160 mμ with a variation of ± 440 mμ; (2) a moderate pleomorphism with resultant elliptical, round, or tear-drop shapes but no filamentous or "tailed" forms; (3) characteristic spikes 20 mμ long, usually club- or pear-shaped narrow at the base and 10 mμ wide at the outer edge, spaced widely apart and distributed fairly uniformly about the circumference of the particle.[52]
Invention of the name and history of the taxonomy
By mid-1967 it was recognised that IBV, MHV, B814 and 229E were structurally and biologically similar so that they form a distinct group.[53][54] Tyrrell met Waterson and Almeida in London to decide on the name of the viruses. Almeida had earlier suggested the term "influenza-like" because of their resemblance, but Tyrrell thought it inappropriate.[3] Almeida came up with a novel name "coronavirus".[55] Tyrrell wrote of his recollection in Cold Wars: The Fight Against the Common Cold in 2002:
Even though we could only base our judgement on the electron microscope images we were quite certain that we had identified a previously unrecognised group of viruses. So what should we call them? 'Influenza-like' seem a bit feeble, somewhat vague, and probably misleading. We looked more closely at the appearance of the new viruses and noticed that they had a kind of halo surrounding them. Recourse to a dictionary produced the Latin equivalent, corona, and so the name coronavirus was born.[3]
Proposal of the new name was submitted to and accepted by the International Committee for the Nomenclature of Viruses (ICNV, established in 1966).[2] The 16 November 1968 issue of Nature reported the justification by J. D. Almeida, D.M. Berry, C.H. Cunningham, D. Hamre, M.S. Hofstad, L. Mallucci, K. McIntosh and D.A.J. Tyrrell as:
Particles [of IBV] are more or less rounded in profile; although there is a certain amount of polymorphism, there is also a characteristic "fringe" of projections 200 Å long, which are rounded or petal shaped, rather than sharp or pointed, as in the myxoviruses. This appearance, recalling the solar corona, is shared by mouse hepatitis virus and several viruses recently recovered from man, namely strain B814, 229E and several others... In the opinion of the eight virologists these viruses are members of a previously unrecognized group which they suggest should be called the coronaviruses, to recall the characteristic appearance by which these viruses are identified in the electron microscope.[56]
Coronavirus was accepted as a genus name by ICNV in its first report in 1971.[57] IBV was then officially designated the type species as Avian infectious bronchitis virus (but renamed to Avian coronavirus in 2009).[58] The so-called "hepatoencephalitis group of murine viruses"[20] were grouped into a single species named Mouse hepatitis virus, as approved in 1971. The species was merged with Rat coronavirus (discovered in 1970[23]) and Puffinosis coronavirus (discovered in 1982[59]) as Murine coronavirus in 2009.[60] 229E and OC43 were collectively named Human respiratory virus but merged as Human coronavirus 229E (HCoV-229E) in 2009.[61] The first discovered human coronavirus B814 was antigenically different from 229E and OC43,[62] but it could not be propagated in culture and was exhausted during experiments in 1968,[63] thus, was excluded in taxonomy. Coroniviridae was adopted as the family name in the ICNV (soon after renamed International Committee on Taxonomy of Viruses, ICTV) second report in 1975.[64][65]
229E and OC43 were together named Human respiratory virus in the ICNV first report. The species was split into Human coronavirus 229E (HCoV-OC229E) and Human coronavirus OC43 (HCoV-OC43) in 1995.[66] While HCoV-OC229E is retained as a valid species, HCoV-OC43 was merged with Porcine hemagglutinating encephalomyelitis virus (discovered in 1962[67]), Bovine coronavirus (discovered in 1973[68]), Human enteric coronavirus (discovered in 1975[69]), Equine coronavirus (discovered in 2000[70]) and Canine respiratory coronavirus (discovered in 2003[71]) into a single species Betacoronavirus 1 in 2009.[72]
Owing to increasing number and diversity of new species discovered, CTV split the genus Coronavirus in 2009 into four genera, Alphacoronavirus, Betacoronavirus, Deltacoronavirus, and Gammacoronavirus.[73][74] As of 2022, there are 52 species of coronaviruses in the subfamily Orthocoronavirinae under the family Coronaviridae,[75] of which seven are of humans while 45 are those of other animals such as pigs, dogs, cats, rodents, cows, horses, camels, Beluga whales, birds and bats.[2] There are also 35 reported species which are yet to be assigned official names.[75]
Coronaviruses that are transmitted from animals (
Two distinct viruses are known under this species, namely
In April 2012, the Ministry of Health, Jordan, reported an outbreak of acute respiratory illness affecting 11 people at a hospital in Zarqa.
A viral infection in pigs, called
In 1963, Jean Holzworth at the Angell Memorial Animal Hospital in Boston described a new intestinal disease of cats.[135] In 1966, it was shown to cause inflammation of the abdomen in cats and was referred to as feline infectious peritonitis.[136] Its causative virus was identified in 1968.[137] Another cat coronavirus, feline enteric coronavirus, was reported in 1981 as closely related to feline infectious peritonitis virus,[138] and was subsequently found to be more common, more innocuous and principally responsible for diarrhoea.[139][140] In 1991, ICTV gave the name Feline infectious peritonitis virus (FIPV) to include both the viruses.[134] It was generally assumed that the two viruses were distinct types; but in 1998, it was shown that feline infectious peritonitis virus arises from feline enteric virus by spontaneous mutation.[141] A common name, Feline coronavirus (FCoV) was then widely used.[140]
In 1974, a new coronavirus was discovered from US military dogs,[142] and was named by ICTV in 1991 as Canine coronavirus. PTGV, FIPV, and dog virus were shown to have apparent relatedness by the early 1990s.[143][144] In 1998, a study revealed that FCoV originates from genetic recombination with Canine coronavirus.[145] Based on the molecular and antigenic relationship of the viruses,[146][147] the viruses of pigs, cats and dogs were merged into a single species and was renamed Alphacoronavirus 1 in 2009.[134][148]
Porcine epidemic diarrhea virus
An acute infectious diarrhoea was first known in England in 1971 and was specifically among fattening pigs and sows. It was referred to as TOO (for "the other one") or TGE2 (for "transmissible gastroenteritis type 2") as the symptoms were similar to transmissible gastroenteritis. Other than causing rapid and acute diarrhoea, it was not a fatal disease. The case was first reported by John Godfrey Oldham in a letter to the editor of Pig Farming in 1972 using the title "Epidemic diarrhoea – How it all began".[149][150] It was similar in symptoms to those of PTGV infection, but only affected piglets. It spread to the neighbouring countries and was referred to as epidemic viral diarrhea.[151] A second outbreak occurred in 1976, and was called "porcine epidemic diarrhoea."[152] It eventually spread throughout Europe. M. B. Pensaert and P. de Bouck at the Ghent University, Belgium isolated and identified the new coronavirus in 1978, and designated it CV777.[153] ICTV officially renamed the virus Porcine epidemic diarrhea virus in 1995.[154] An epidemic broke out from China in 2010 that spread throughout the world. A virulent strain emerged in US between 2013 and 2015. It affected pigs of all ages, and mortality was as high as 95% among the suckling piglets. Another severe outbreak occurred in Germany in 2014 that spread to other European countries.[155]
Reagan and his colleagues at the
50 percent of the bats exposed to the infectious bronchitis virus showed symptoms or death in the intracerebral, intraperitoneal, intradermal, intracardiac and intraocular groups; 75 percent in the intranasal and intrarectal groups; 100 percent in the intraoral group; and 25 percent intralingual and intramuscular group, whereas the controls appeared normal.[156]
But nothing was known of the real nature of bats as reservoirs of coronaviruses until the epidemic of severe acute respiratory syndrome of humans in 2002/2003. Since the identification of SARS-CoV was identified in early 2003,[157] and horseshoe bats as their natural hosts in 2005,[97][98] bats have been extensively studied. Among all coronavirus hosts, bats are known to harbour the most variety, with more than 30 species identified.[158][159] According to diversity estimate, there may be 3,200 species of coronaviruses in bats.[160]
Evolutionary history
It is not known with certainty when all coronaviruses evolved from the most recent common ancestor (MRCA). It is suggested that divergences of coronaviruses were the results of sequential genetic recombination in the ancestral species that confer an ability to infect animals other than their original hosts.[161][162] The principal genetic target of recombination is the S gene that codes for the spike (S) protein essential for binding to the host's tissue, as well as orf8 that encodes an accessory protein.[163][164] Phylogenetic analyses present contrasting estimates varying from thousands to million years. A study in 2012 suggested that the MRCA lived around 8,100 years ago. The four known genera Alphacoronavirus, Betacoronavirus, Gammacoronavirus, and Deltacoronavirus split up around 2,400 to 3,300 years ago into bat and avian coronavirus ancestors. Bat coronavirus gave rise to the species of Alphacoronavirus and Betacoronavirus that infect mammals, while avian coronavirus produced those of Gammacoronavirus and Deltacoronavirus that infect birds.[165] However, a revised analysis indicates that the MRCA that could have lived around 190 to 489 (with a mean of 293) million years ago, and separation into new groups started a few million years after.[166]
It is also not yet clear how coronaviruses jump from bats and birds to other animals. Some genetic evidences indicate that animal coronaviruses switch hosts from one mammal to another. For example, the coronaviruses of dog (Canine respiratory coronavirus), cattle (Bovine coronavirus), and human (HCoV-OC43) share over 98% similarities, suggesting their common origin from a single host.[167][168] There is an evidence that HCoV-OC43 came from cattle around 1890, which makes it likely the first zoonotic coronavirus.[169] Although no details are yet available, but it is generally believed that MERS-CoV originated from bat coronavirus and specifically suggested to have evolved from the common ancestor of BtCoV-HKU4 and BtCoV-HKU5, under the genus Betacoronavirus.[170][171] Genetic estimate indicates that SARS-CoV-2 evolved from bat coronavirus in around 1948.[116] Another estimate suggests SARS-CoV-2 shares a common ancestor with bat coronavirus RmYN02 in about 1976.[172] SARS-CoV also possibly originated in around 1962 from the same horseshoe bats that harbours SARS-like coronaviruses.[116] It was transmitted humans in around 1998 (4.08 years prior to the outbreak in 2003).[173]
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This article was submitted to WikiJournal of Medicine for external academic peer review in 2020 (reviewer reports). The updated content was reintegrated into the Wikipedia page under a CC-BY-SA-3.0 license (2022). The version of record as reviewed is:
Kholhring Lalchhandama; et al. (5 August 2022). "A history of coronaviruses" (PDF). WikiJournal of Medicine. 9 (1): 5. {{cite journal}}
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