Ontology engineering
In computer science, information science and systems engineering, ontology engineering is a field which studies the methods and methodologies for building ontologies, which encompasses a representation, formal naming and definition of the categories, properties and relations between the concepts, data and entities of a given domain of interest. In a broader sense, this field also includes a knowledge construction of the domain using formal ontology representations such as OWL/RDF.
A large-scale representation of abstract concepts such as actions, time, physical objects and beliefs would be an example of ontological engineering.
Ontology engineering aims at making explicit the knowledge contained within software applications, and within enterprises and business procedures for a particular domain. Ontology engineering offers a direction towards solving the inter-operability problems brought about by semantic obstacles, i.e. the obstacles related to the definitions of business terms and software classes. Ontology engineering is a set of tasks related to the development of ontologies for a particular domain.
Automated processing of information not interpretable by
Ontology languages
An ontology language is a formal language used to encode the ontology. There are a number of such languages for ontologies, both proprietary and standards-based:
- Common logicis ISO standard 24707, a specification for a family of ontology languages that can be accurately translated into each other.
- The first-order predicate calculuswith some higher-order extensions.
- The Gellish language includes rules for its own extension and thus integrates an ontology with an ontology language.
- IDEF5 is a software engineering method to develop and maintain usable, accurate, domain ontologies.
- KIF is a syntax for first-order logic that is based on S-expressions.
- F-Logicand its successor ObjectLogic combine ontologies and rules.
- URIs.
- OntoUML is a well-founded language for specifying reference ontologies.
- SHACL (RDF SHapes Constraints Language) is a language for describing structure of RDF data. It can be used together with RDFS and OWL or it can be used independently from them.
- XBRL (Extensible Business Reporting Language) is a syntax for expressing business semantics.
Ontology engineering in life sciences
Life sciences is flourishing with ontologies that biologists use to make sense of their experiments.[7] For inferring correct conclusions from experiments, ontologies have to be structured optimally against the knowledge base they represent. The structure of an ontology needs to be changed continuously so that it is an accurate representation of the underlying domain.
Recently, an automated method was introduced for engineering ontologies in life sciences such as
- The Generic Model Organism Project (GMOD)
- Gene Ontology Consortium
- Sequence Ontology
- Ontology Lookup Service
- The Plant Ontology Consortium
- Standards and Ontologies for Functional Genomics
and more
Methodologies and tools for ontology engineering
- DOGMA
- DogmaModeler
- KAON
- OntoClean
- HOZO
- Protégé (software)
- Gra.fo (http://gra.fo)
- SABiO[11]
- TopBraid Composer
- TopBraid EDG
- HCOME: Human-centered collaborative ontology engineering methodology (http://semanticweb.org/wiki/SharedHCONE.html Archived 2015-09-25 at the Wayback Machine and HCOME-3O)
See also
- Ontology (information science)
- Ontology components
- Ontology double articulation
- Ontology learning
- Ontology modularization
- Semantic decision table
- Semantic integration
- Semantic technology
- Semantic Web
- Linked data
References
This article incorporates public domain material from the National Institute of Standards and Technology
- ^ Peter Shames, Joseph Skipper. "Toward a Framework for Modeling Space Systems Architectures" Archived 2009-02-27 at the Wayback Machine. NASA, JPL.
- ^ http://ontology.buffalo.edu/bfo/BeyondConcepts.pdf [bare URL PDF]
- .
- ^ Asunción Gómez-Pérez, Mariano Fernández-López, Oscar Corcho (2004). Ontological Engineering: With Examples from the Areas of Knowledge Management, E-commerce and the Semantic Web. Springer, 2004.
- .
- S2CID 16505884.
- PMID 20200009.
- PMID 20139945.
- PMID 10802651. Archived from the original(PDF) on 2011-05-26.
- PMID 17098937.
- ^ Falbo, Ricardo (2014). "SABiO: Systematic Approach for Building Ontologies" (PDF). Proceedings of the 1st Joint Workshop ONTO.COM / ODISE on Ontologies in Conceptual Modeling and Information Systems Engineering Co-located with 8th International Conference on Formal Ontology in Information Systems, ONTO.COM/ODISE@FOIS 2014, Rio de Janeiro, Brazil, September 21, 2014. 1301 – via CEUR-WS.org.
Further reading
- Kotis, K., A. Papasalouros, G. A. Vouros, N. Pappas, and K. Zoumpatianos, "Enhancing the Collective Knowledge for the Engineering of Ontologies in Open and Socially Constructed Learning Spaces", Journal of Universal Computer Science, vol. 17, issue 12, pp. 1710–1742, 08/2011
- Kotis, K., and A. Papasalouros, "Learning useful kick-off ontologies from Query Logs: HCOME revised", 4th International Conference on Complex, Intelligent and Software Intensive Systems (CISIS-2010), Kracow, IEEE Computer Society Press, 2010.
- John Davies (Ed.) (2006). Semantic Web Technologies: Trends and Research in Ontology-based Systems. Wiley. ISBN 978-0-470-02596-3
- Asunción Gómez-Pérez, Mariano Fernández-López, Oscar Corcho (2004). Ontological Engineering: With Examples from the Areas of Knowledge Management, E-commerce and the Semantic Web. Springer, 2004.
- Jarrar, Mustafa (2006). "Position paper". Proceedings of the 15th international conference on World Wide Web - WWW '06. pp. 497–503. S2CID 14184354.
- Mustafa Jarrar and Robert Meersman (2008). "Ontology Engineering -The DOGMA Approach". Book Chapter (Chapter 3). In Advances in Web Semantics I. Volume LNCS 4891, Springer.
- Riichiro Mizoguchi (2004). "Tutorial on ontological engineering: part 3: Advanced course of ontological engineering" Archived 2013-03-09 at the Wayback Machine. In: New Generation Computing. Ohmsha & Springer-Verlag, 22(2):198-220.
- Elena Paslaru Bontas Simperl and Christoph Tempich (2006). "Ontology Engineering: A Reality Check"
- Devedzić, Vladan (2002). "Understanding ontological engineering". Communications of the ACM. 45 (4): 136–144. S2CID 5352880.
- Sure, York, Staab, Steffen and Studer, Rudi (2009). Ontology Engineering Methodology. In Staab, Steffen & ISBN 978-3-540-70999-2