Rc-o319

Source: Wikipedia, the free encyclopedia.
Rc-o319
Virus classification Edit this classification
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Pisuviricota
Class: Pisoniviricetes
Order: Nidovirales
Family: Coronaviridae
Genus: Betacoronavirus
Subgenus: Sarbecovirus
Species:
Severe acute respiratory syndrome–related coronavirus
Strain:
Rc-o319

Rc-o319 is a bat-derived strain of

severe acute respiratory syndrome–related coronavirus collected in little Japanese horseshoe bats (Rhinolophus cornutus) from sites in Iwate, Japan.[1][2] Its has 81% similarity to SARS-CoV-2
and is the earliest strain branch of the SARS-CoV-2 related coronavirus.

A phylogenetic tree based on whole-genome sequences of SARS-CoV-2 and related coronaviruses is:[3][4]

SARS‑CoV‑2 related coronavirus

(

Rhinolophus cornutus, Iwate, Japan[1]

Bat

Rhinolophus pusillus, Zhoushan, Zhejiang[5]

Bat SL-ZC45, 88% to SARS-CoV-2, Rhinolophus pusillus, Zhoushan, Zhejiang[5]

Manis javanica, smuggled from Southeast Asia[6]

Pangolin SARSr-CoV-GD, 90.1% to SARS-CoV-2, Manis javanica, smuggled from Southeast Asia[7]

Bat RshSTT182, 92.6% to SARS-CoV-2,

Steung Treng, Cambodia[8]

Bat RshSTT200, 92.6% to SARS-CoV-2, Rhinolophus shameli, Steung Treng, Cambodia[8]

(Bat)

Chachoengsao, Thailand[4]

(Bat)

Rhinolophus malayanus, Mengla, Yunnan[9]

(Bat)

Xishuangbanna, Yunnan[3]

(Bat)

Rhinolophus affinis, Mojiang, Yunnan[10]

(Bat)

Rhinolophus malayanus, Vientiane, Laos[11]

SARS-CoV-2

SARS-CoV-1
, 79% to SARS-CoV-2

References

  1. ^
    PMID 33219796
    .
  2. S2CID 227157702
    .
  3. ^
    PMID 34147139
    .
  4. ^
    PMID 33563978
    .
  5. ^
    PMID 32416074
    .
  6. S2CID 214683303
    .
  7. S2CID 256822274
    .
  8. ^
    PMID 34753934
    .
  9. PMID 32416074
    .
  10. PMID 32015507
    .
  11. S2CID 246902858
    .


Stub icon

This virus-related article is a stub. You can help Wikipedia by expanding it.

Retrieved from "https://en.wikipedia.org/w/index.php?title=Rc-o319&oldid=1189537616"