Partition coefficient
In the
In the
If one of the solvents is a gas and the other a liquid, a gas/liquid partition coefficient can be determined. For example, the
Partition coefficients can be measured experimentally in various ways (by shake-flask,
If a substance is present as several
Nomenclature
Despite formal recommendation to the contrary, the term partition coefficient remains the predominantly used term in the scientific literature.[8][additional citation(s) needed]
In contrast, the
-
(KD)A = [A]org/ [A]aq,(1)
where KD is the process
Partition coefficient and log P
The partition coefficient, abbreviated P, is defined as a particular ratio of the
To a first approximation, the non-polar phase in such experiments is usually dominated by the un-ionized form of the solute, which is electrically neutral, though this may not be true for the aqueous phase. To measure the partition coefficient of ionizable solutes, the pH of the aqueous phase is adjusted such that the predominant form of the compound in solution is the un-ionized, or its measurement at another pH of interest requires consideration of all species, un-ionized and ionized (see following).
A corresponding partition coefficient for ionizable compounds, abbreviated log P I, is derived for cases where there are dominant ionized forms of the molecule, such that one must consider partition of all forms, ionized and un-ionized, between the two phases (as well as the interaction of the two equilibria, partition and ionization).[11]: 57ff, 69f [12] M is used to indicate the number of ionized forms; for the I-th form (I = 1, 2, ... , M) the logarithm of the corresponding partition coefficient, , is defined in the same manner as for the un-ionized form. For instance, for an octanol–water partition, it is
To distinguish between this and the standard, un-ionized, partition coefficient, the un-ionized is often assigned the symbol log P0, such that the indexed expression for ionized solutes becomes simply an extension of this, into the range of values I > 0.[citation needed]
Distribution coefficient and log D
The distribution coefficient, log D, is the ratio of the sum of the concentrations of all forms of the compound (ionized plus un-ionized) in each of the two phases, one essentially always aqueous; as such, it depends on the pH of the aqueous phase, and log D = log P for non-ionizable compounds at any pH.[13][14] For measurements of distribution coefficients, the pH of the aqueous phase is buffered to a specific value such that the pH is not significantly perturbed by the introduction of the compound. The value of each log D is then determined as the logarithm of a ratio—of the sum of the experimentally measured concentrations of the solute's various forms in one solvent, to the sum of such concentrations of its forms in the other solvent; it can be expressed as[10]: 275–8
In the above formula, the superscripts "ionized" each indicate the sum of concentrations of all ionized species in their respective phases. In addition, since log D is pH-dependent, the pH at which the log D was measured must be specified. In areas such as drug discovery—areas involving partition phenomena in biological systems such as the human body—the log D at the physiologic pH = 7.4 is of particular interest.[citation needed]
It is often convenient to express the log D in terms of PI, defined above (which includes P0 as state I = 0), thus covering both un-ionized and ionized species.[12] For example, in octanol–water:
which sums the individual partition coefficients (not their logarithms), and where indicates the pH-dependent mole fraction of the I-th form (of the solute) in the aqueous phase, and other variables are defined as previously.[12][verification needed]
Example partition coefficient data
The values for the octanol-water system in the following table are from the
Component | log POW | T (°C) |
---|---|---|
Acetamide[16] | −1.16 | 25 |
Methanol[17] | −0.81 | 19 |
Formic acid[18] | −0.41 | 25 |
Diethyl ether[17] | 0.83 | 20 |
p-Dichlorobenzene[19] |
3.37 | 25 |
Hexamethylbenzene[19] | 4.61 | 25 |
2,2',4,4',5-Pentachlorobiphenyl[20] | 6.41 | Ambient |
Values for other compounds may be found in a variety of available reviews and monographs.[2]: 551ff [21][page needed][22]: 1121ff [23][page needed][24] Critical discussions of the challenges of measurement of log P and related computation of its estimated values (see below) appear in several reviews.[11][24]
Applications
Pharmacology
A drug's distribution coefficient strongly affects how easily the drug can reach its intended target in the body, how strong an effect it will have once it reaches its target, and how long it will remain in the body in an active form.[25] Hence, the log P of a molecule is one criterion used in decision-making by medicinal chemists in pre-clinical drug discovery, for example, in the assessment of druglikeness of drug candidates.[26] Likewise, it is used to calculate lipophilic efficiency in evaluating the quality of research compounds, where the efficiency for a compound is defined as its potency, via measured values of pIC50 or pEC50, minus its value of log P.[27]
Pharmacokinetics
In the context of
Pharmacodynamics
In the context of
Environmental science
The hydrophobicity of a compound can give scientists an indication of how easily a compound might be taken up in groundwater to pollute waterways, and its toxicity to animals and aquatic life.
Agrochemical research
Hydrophobic insecticides and herbicides tend to be more active. Hydrophobic agrochemicals in general have longer half-lives and therefore display increased risk of adverse environmental impact.[36]
Metallurgy
In metallurgy, the partition coefficient is an important factor in determining how different impurities are distributed between molten and solidified metal. It is a critical parameter for purification using zone melting, and determines how effectively an impurity can be removed using directional solidification, described by the Scheil equation.[6]
Consumer product development
Many other industries take into account distribution coefficients, for example in the formulation of make-up, topical ointments, dyes, hair colors and many other consumer products.[37]
Measurement
A number of methods of measuring distribution coefficients have been developed, including the shake-flask, separating funnel method, reverse-phase HPLC, and pH-metric techniques.[10]: 280
Separating-funnel method
In this method the solid particles present into the two immiscible liquids can be easily separated by suspending those solid particles directly into these immiscible or somewhat miscible liquids.
Shake flask-type
The classical and most reliable method of log P determination is the shake-flask method, which consists of dissolving some of the solute in question in a volume of octanol and water, then measuring the concentration of the solute in each solvent.
HPLC-based
A faster method of log P determination makes use of
An advantage of this method is that it is fast (5–20 minutes per sample). However, since the value of log P is determined by linear regression, several compounds with similar structures must have known log P values, and extrapolation from one chemical class to another—applying a regression equation derived from one chemical class to a second one—may not be reliable, since each chemical classes will have its characteristic regression parameters.[citation needed]
pH-metric
The pH-metric set of techniques determine lipophilicity pH profiles directly from a single acid-base titration in a two-phase water–organic-solvent system.[10]: 280–4 Hence, a single experiment can be used to measure the logarithms of the partition coefficient (log P) giving the distribution of molecules that are primarily neutral in charge, as well as the distribution coefficient (log D) of all forms of the molecule over a pH range, e.g., between 2 and 12. The method does, however, require the separate determination of the pKa value(s) of the substance.
Electrochemical
Polarized liquid interfaces have been used to examine the thermodynamics and kinetics of the transfer of charged species from one phase to another. Two main methods exist. The first is ITIES, "interfaces between two immiscible electrolyte solutions".[41] The second is droplet experiments.[42] Here a reaction at a triple interface between a conductive solid, droplets of a redox active liquid phase and an electrolyte solution have been used to determine the energy required to transfer a charged species across the interface.[43]
Single-cell approach
There are attempts to provide partition coefficients for drugs at a single-cell level.[44][45] This strategy requires methods for the determination of concentrations in individual cells, i.e., with Fluorescence correlation spectroscopy or quantitative Image analysis. Partition coefficient at a single-cell level provides information on cellular uptake mechanism.[45]
Prediction
There are many situations where prediction of partition coefficients prior to experimental measurement is useful. For example, tens of thousands of industrially manufactured chemicals are in common use, but only a small fraction have undergone rigorous
Atom-based
Standard approaches of this type, using atomic contributions, have been named by those formulating them with a prefix letter: AlogP,
Fragment-based
The most common of these uses a
Knowledge-based
A typical
Log D from log P and pKa
For cases where the molecule is un-ionized:[13][14]
For other cases, estimation of log D at a given pH, from log P and the known mole fraction of the un-ionized form, , in the case where partition of ionized forms into non-polar phase can be neglected, can be formulated as[13][14]
The following approximate expressions are valid only for monoprotic acids and bases:[13][14]
Further approximations for when the compound is largely ionized:[13][14]
- for acids with , ,
- for bases with , .
For prediction of pKa, which in turn can be used to estimate log D, Hammett type equations have frequently been applied.[57][58]
Log P from log S
If the solubility, S, of an organic compound is known or predicted in both water and 1-octanol, then log P can be estimated as[46][59]
There are a variety of approaches to predict solubilities, and so log S.[60][61]
Octanol-water partition coefficient
The partition coefficient between n-Octanol and water is known as the n-octanol-water partition coefficient, or Kow.[62] It is also frequently referred to by the symbol P, especially in the English literature. It is also known as n-octanol-water partition ratio.[63][64][65]
Kow, being a type of partition coefficient, serves as a measure of the relationship between lipophilicity (fat solubility) and hydrophilicity (water solubility) of a substance. The value is greater than one if a substance is more soluble in fat-like solvents such as n-octanol, and less than one if it is more soluble in water.[citation needed]
Example values
Values for log Kow typically range between -3 (very hydrophilic) and +10 (extremely lipophilic/hydrophobic).[66]
The values listed here[67] are sorted by the partition coefficient. Acetamide is hydrophilic, and 2,2′,4,4′,5-Pentachlorobiphenyl is lipophilic.
Substance | log KOW | T | Reference |
---|---|---|---|
Acetamide | −1.155 | 25 °C | |
Methanol | −0.824 | 19 °C | |
Formic acid | −0.413 | 25 °C | |
Diethyl ether | 0.833 | 20 °C | |
p-Dichlorobenzene | 3.370 | 25 °C | |
Hexamethylbenzene | 4.610 | 25 °C | |
2,2′,4,4′,5- Pentachlorobiphenyl
|
6.410 | Ambient |
See also
- Blood–gas partition coefficient – Measure of solubility of general anaesthetics in blood
- Cheminformatics – Interdisciplinary science
- Lipinski's rule of five – Rule of thumb to predict if a chemical compound is likely to be an orally active drug
- Lipophilic efficiency – Parameter used in drug design
- Distribution law – Generalisation describing the distribution of a solute between two non miscible solvents.
- ITIES – Electrochemical interface that is either polarisable or polarised
- Ionic partition diagram
References
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Further reading
- Berthod A, Carda-Broch S (May 2004). "Determination of liquid-liquid partition coefficients by separation methods". (secondary). Journal of Chromatography A. 1037 (1–2): 3–14. PMID 15214657.
- Comer J, Tam K (2001). "Lipophilicity Profiles: Theory and Measurement". In Testa B, van de Waterbed HM, Folkers G, Guy R (eds.). Pharmacokinetic Optimization in Drug Research: Biological, Physicochemical, and Computational Strategies. (secondary). Weinheim: Wiley-VCH. pp. 275–304. ISBN 978-3-906390-22-2.
- Hansch C, Leo A (1979). Substituent Constants for Correlation Analysis in Chemistry and Biology. (secondary). New York: John Wiley & Sons Ltd. ISBN 978-0-471-05062-9.
- Hill AP, Young RJ (August 2010). "Getting physical in drug discovery: a contemporary perspective on solubility and hydrophobicity". (secondary). Drug Discovery Today. 15 (15–16): 648–55. PMID 20570751.
- Kah M, Brown CD (August 2008). "LogD: lipophilicity for ionisable compounds". (secondary). Chemosphere. 72 (10): 1401–8. PMID 18565570.
- Klopman G, Zhu H (February 2005). "Recent methodologies for the estimation of n-octanol/water partition coefficients and their use in the prediction of membrane transport properties of drugs". (secondary). Mini Reviews in Medicinal Chemistry. 5 (2): 127–33. PMID 15720283.
- Leo A, Hansch C, and Elkins D (1971). "Partition coefficients and their uses". (secondary). Chem Rev. 71 (6): 525–616. .
- Leo A, Hoekman DH, Hansch C (1995). Exploring QSAR, Hydrophobic, Electronic, and Steric Constants. (secondary). Washington, DC: American Chemical Society. ISBN 978-0-8412-3060-6.
- Mannhold R, Poda GI, Ostermann C, Tetko IV (March 2009). "Calculation of molecular lipophilicity: State-of-the-art and comparison of log P methods on more than 96,000 compounds". (secondary). Journal of Pharmaceutical Sciences. 98 (3): 861–93. S2CID 9595034.
- ISBN 978-1-4200-7099-6.
- Pandit NK (2007). "Chapter 3: Solubility and Lipophilicity". Introduction to the Pharmaceutical Sciences. (secondary) (1st ed.). Baltimore, MD: Lippincott Williams & Wilkins. pp. 34–37. ISBN 978-0-7817-4478-2.
- Pearlman RS, Dunn WJ, Block JH (1986). Partition Coefficient: Determination and Estimation. (secondary) (1st ed.). New York: Pergamon Press. ISBN 978-0-08-033649-7.
- Sangster J (1997). Octanol-Water Partition Coefficients: Fundamentals and Physical Chemistry. (secondary). Wiley Series in Solution Chemistry. Vol. 2. Chichester: John Wiley & Sons Ltd. ISBN 978-0-471-97397-3.
External links
- vcclab.org. Overview of the many logP and other physical property calculators available commercially and on-line.
- XLOGP3, a simple LogP estimater used by PubChem (release 2021.05.07)