Verrucomicrobiota
| Verrucomicrobiota | |
|---|---|
| |
| Transmission electron micrograph of stage II epixenosomes. | |
Scientific classification 
| |
| Domain: | Bacteria |
| Superphylum: | PVC superphylum |
| Phylum: | Verrucomicrobiota Hedlund 2021[1] |
| Classes | |
| |
| Synonyms | |
| |
Verrucomicrobiota is a phylum of
ectosymbionts of protists and endosymbionts of nematodes from genus Xiphinema, residing in their gametes.[2][3]
Verrucomicrobiota are abundant within the environment, though relatively inactive.Planctomycetales.
Verrucomicrobiota might belong in the
Planctobacteria in the larger clade Gracilicutes.[9]
In 2008, the whole genome of Methylacidiphilum infernorum (2.3 Mbp) was published. On the single circular chromosome, 2473 predicted proteins were found, 731 of which had no detectable homologs. These analyses also revealed many possible homologies with Pseudomonadota.[10][11]
Phylogeny
| 16S rRNA based | 120 single copy marker proteins based GTDB 08-RS214[15][16][17] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
Taxonomy
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[18] and National Center for Biotechnology Information (NCBI)[19]
- Genus ?"Ca. Epixenosoma" Bauer et al. 2005
- Genus ?"Ca. Nucleicoccus" corrig. Sato et al. 2014
- Genus ?"Ca. Organicella" Williams et al. 2021
- Genus ?"Ca. Rhizospheria" Nunes da Rocha 2010
- Class OpitutaeChoo et al. 2007
- Order Opitutales Choo et al. 2007
- Family "Cerasicoccaceae" Pallen, Rodriguez-R & Alikhan 2022 [KCTC-12870]
- Genus Ruficoccus Lin et al. 2017
- Genus Cerasicoccus Yoon et al. 2007
- Family "Coraliomargaritaceae" Pallen, Rodriguez-R & Alikhan 2022 [DSM-45221]
- Genus "Lentimonas" Choo & Cho 2006
- Genus Coraliomargarita Yoon et al. 2007
- Family "Merdousiaceae" Pallen, Rodriguez-R & Alikhan 2022 [CAG-312]
- Genus "Ca. Merdousia" Gilroy et al. 2021
- Family "Moanibacteraceae" Pallen, Rodriguez-R & Alikhan 2022 [UBA2987]
- Genus "Ca. Moanibacter" corrig. Vosseberg, Martijn & Ettema 2018
- Family Opitutaceae Choo et al. 2007
- Genus Alterococcus Shieh and Jean 1999
- Genus Cephaloticoccus Lin et al. 2016
- Genus "Ca. Didemniditutus" corrig. Lopera et al. 2017
- Genus Ereboglobus Tegtmeier et al. 2018
- Genus "Geminisphaera" Wertz et al. 2018
- Genus "Lacunisphaera" Rast et al. 2017
- Genus Nibricoccus Baek et al. 2019
- Genus Oleiharenicola Rochman et al. 2018
- Genus Opitutus Chin et al. 2001
- Genus Pelagicoccus Yoon et al. 2007
- Genus Rariglobus Pitt et al. 2020
- Genus "Ca. Synoicihabitans" Murray et al. 2021
- Family Puniceicoccaceae Choo et al. 2007
- Genus "Ca. Fucivorax" Orellana et al. 2022
- Genus "Ca. Marcellius" Nixon et al. 2019
- Genus "Ca. Pelagisphaera" Bar-Shalom et al. 2023
- Genus "Ca. Pinguicoccus" Serra et al. 2020
- Genus Puniceicoccus Choo et al. 2007
- Family "Spyradosomataceae" Pallen, Rodriguez-R & Alikhan 2022 [UBA953]
- Genus "Ca. Spyradosoma" Gilroy et al. 2021
- Family Verruco-01
- Genus Oceanipulchritudo Feng et al. 2020
- Family "Cerasicoccaceae" Pallen, Rodriguez-R & Alikhan 2022 [KCTC-12870]
- Order Opitutales Choo et al. 2007
- Class "Methylacidiphilae"
- Order "Methylacidiphilales" Op den Camp 2009 ["Limisphaerales" Podosokorskaya et al. 2022]
- Family "Methylacidiphilaceae" Op den Camp 2009
- Genus "Methylacidimicrobium" van Teeseling et al. 2014
- Genus "Ca. Methylacidiphilum" Hou et al. 2008
- Genus "Ca. Methylacidithermus" Picone et al. 2021
- Family "Limisphaeraceae" Pallen, Rodriguez-R & Alikhan 2022 [NGM72-4]
- Genus Limisphaera Anders et al. 2015
- Family "Pedosphaeraceae"
- Genus "Pedosphaera" Ozyurt 2008
- Family "Methylacidiphilaceae" Op den Camp 2009
- Order "Methylacidiphilales" Op den Camp 2009 ["Limisphaerales" Podosokorskaya et al. 2022]
- Class Terrimicrobia García-López et al. 2020
- Order Terrimicrobiales García-López et al. 2020 ["Chthoniobacterales" Sangwan et al. 2004]
- Family "Chthoniobacteraceae" Sangwan et al. 2004
- Genus "Chthoniobacter" Sangwan et al. 2004
- Family Terrimicrobiaceae García-López et al. 2020
- Genus Terrimicrobium Qiu et al. 2014
- Family "Udaeobacteraceae" Pallen, Rodriguez-R & Alikhan 2022 [UBA10450]
- Genus "Ca. Udaeobacter" Brewer et al. 2016
- Family "Xiphinematobacteraceae"
- Genus "Ca. Xiphinematobacter" Vandekerckhove et al. 2000
- Family "Chthoniobacteraceae" Sangwan et al. 2004
- Order Terrimicrobiales García-López et al. 2020 ["Chthoniobacterales" Sangwan et al. 2004]
- Class Verrucomicrobiae Hedlund et al. 1998
- Order Verrucomicrobiales Ward-Rainey et al. 1996
- Family Akkermansiaceae Hedlund & Derrien 2012
- Genus Akkermansia Derrien et al. 2004
- Genus Haloferula Yoon et al. 2008
- Genus Luteolibacter Yoon et al. 2008
- Genus "Ca. Mariakkermansia" Orellana et al. 2022
- Genus Oceaniferula Jin et al. 2022
- Genus Persicirhabdus Yoon et al. 2008
- Genus Roseibacillus Yoon et al. 2008
- Genus Rubritalea Scheuermayer et al. 2006
- Family SLCJ01
- Genus "Sulfuriroseicoccus" Feng et al. 2022
- Family Verrucomicrobiaceae Ward-Rainey et al. 1996
- Genus "Fucophilus" Sakai et al. 2001b
- Genus Brevifollis Otsuka et al. 2013
- Genus Phragmitibacter Szuróczki et al. 2021
- Genus Prosthecobacter Staley et al. 1976 ex Staley et al. 1980
- Genus Roseimicrobium Otsuka et al. 2013
- Genus Verrucomicrobium Schlesner 1988
- Family Akkermansiaceae Hedlund & Derrien 2012
- Order Verrucomicrobiales Ward-Rainey et al. 1996
See also
References
- S2CID 239887308.
- ISSN 1388-5545.
- PMID 11155997.
- PMID 27822530.
- PMID 15142250.
- PMID 23060863.
- PMID 27279642.
- S2CID 2094762.
- PMID 16704931.
- PMID 18593465.
- ^ Ludwig W, Euzéby J, Whitman WB (2008). "Bergey's Taxonomic Outlines: Volume 4 - Draft Taxonomic Outline of the Bacteroidetes, Planctomycetes, Chlamydiae, Spirochaetes, Fibrobacteres, Fusobacteria, Acidobacteria, Verrucomicrobia, Dictyoglomi, and Gemmatimonadetes" (PDF). Bergey's Manual Trust: 15. Archived from the original (PDF) on 2016-11-08. Retrieved 2011-06-22.
- ^ "The LTP". Retrieved 23 February 2022.
- ^ "LTP_all tree in newick format". Archived from the original on 4 September 2022. Retrieved 23 February 2022.
- ^ "LTP_01_2022 Release Notes" (PDF). Retrieved 23 February 2022.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ J.P. Euzéby. "Verrucomicrobiota". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
- ^ Sayers; et al. "Verrucomicrobia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.